Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23151 | 5' | -62.1 | NC_005178.1 | + | 26705 | 1.12 | 8.1e-05 |
Target: 5'- aCCGUUGCCGGGGUGGCCAAGGGCGCCu -3' miRNA: 3'- -GGCAACGGCCCCACCGGUUCCCGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 19672 | 0.73 | 0.092131 |
Target: 5'- uCCGcgUGCCaGGGcuUGGCCAGaagauGGCGCCg -3' miRNA: 3'- -GGCa-ACGGcCCC--ACCGGUUc----CCGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 33229 | 0.71 | 0.131686 |
Target: 5'- gCCGagGCCGGGGaUGGaCAGcGGCGCa -3' miRNA: 3'- -GGCaaCGGCCCC-ACCgGUUcCCGCGg -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 14267 | 0.71 | 0.135306 |
Target: 5'- gCUGUUcGUCaaGGGUGGCCAgaucGGGGaCGCCc -3' miRNA: 3'- -GGCAA-CGGc-CCCACCGGU----UCCC-GCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 8567 | 0.71 | 0.139018 |
Target: 5'- aUCGgUGCCGcccaGGCCAGGGGCGCg -3' miRNA: 3'- -GGCaACGGCcccaCCGGUUCCCGCGg -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 17046 | 0.7 | 0.154813 |
Target: 5'- gCCGg-GUCGGGGUuaCCGGGGGCGgCg -3' miRNA: 3'- -GGCaaCGGCCCCAccGGUUCCCGCgG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 25156 | 0.7 | 0.163306 |
Target: 5'- aCCGggGUCGGGcacgguUGaGCCAAGGcCGCCg -3' miRNA: 3'- -GGCaaCGGCCCc-----AC-CGGUUCCcGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 36037 | 0.7 | 0.165055 |
Target: 5'- aCCGggGCCGGGGcgaaccagaaccgcuUGGCCcgcuggugggcAAcGGGUGCg -3' miRNA: 3'- -GGCaaCGGCCCC---------------ACCGG-----------UU-CCCGCGg -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 23440 | 0.69 | 0.176833 |
Target: 5'- gCCGacGCCcaGGGcgacGGCC-AGGGCGCCc -3' miRNA: 3'- -GGCaaCGGc-CCCa---CCGGuUCCCGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 14091 | 0.69 | 0.181558 |
Target: 5'- gCCGgcuucgcGCCGGGcGcccUGGCCGucgcccuGGGCGUCg -3' miRNA: 3'- -GGCaa-----CGGCCC-C---ACCGGUu------CCCGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 8750 | 0.69 | 0.186395 |
Target: 5'- gCCcUUGCCGuGGGcgacuUGGCCAGcgugcGGGCGgCg -3' miRNA: 3'- -GGcAACGGC-CCC-----ACCGGUU-----CCCGCgG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 12535 | 0.68 | 0.206894 |
Target: 5'- aCGUUGuuGGaGGgcuUGaGCCAcuacuaucGGGCGCCa -3' miRNA: 3'- gGCAACggCC-CC---AC-CGGUu-------CCCGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 12100 | 0.68 | 0.206894 |
Target: 5'- gUCGcgUGgCGGGccUGGCCGAuGGGCGCg -3' miRNA: 3'- -GGCa-ACgGCCCc-ACCGGUU-CCCGCGg -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 2877 | 0.68 | 0.212314 |
Target: 5'- aCGgcugGCCaGGGUucaGGCUAcGGGCGCg -3' miRNA: 3'- gGCaa--CGGcCCCA---CCGGUuCCCGCGg -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 21060 | 0.68 | 0.212314 |
Target: 5'- -gGUUGCCGGagcGGUugaGGaCCAGGaGGgGCCa -3' miRNA: 3'- ggCAACGGCC---CCA---CC-GGUUC-CCgCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 24409 | 0.68 | 0.212314 |
Target: 5'- aCCGUUGCCcugcgcuauaaGGGcaucaaccUGGCCGAaggcGGcGCGCCg -3' miRNA: 3'- -GGCAACGG-----------CCCc-------ACCGGUU----CC-CGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 26811 | 0.68 | 0.22295 |
Target: 5'- ----aGCCGGGacgcgcuGUGGCCAgcGGGGCuGUCu -3' miRNA: 3'- ggcaaCGGCCC-------CACCGGU--UCCCG-CGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 16660 | 0.68 | 0.223522 |
Target: 5'- gUGUUGCgGucGGUGGUCAGGGcggucauaGCGCCu -3' miRNA: 3'- gGCAACGgCc-CCACCGGUUCC--------CGCGG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 3760 | 0.68 | 0.229312 |
Target: 5'- ----cGCCGGGccaucGCCAAGGGCGgCa -3' miRNA: 3'- ggcaaCGGCCCcac--CGGUUCCCGCgG- -5' |
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23151 | 5' | -62.1 | NC_005178.1 | + | 8123 | 0.68 | 0.235229 |
Target: 5'- uUCGgUGaCCa-GGUGcCCGAGGGCGCCa -3' miRNA: 3'- -GGCaAC-GGccCCACcGGUUCCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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