miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23151 5' -62.1 NC_005178.1 + 19672 0.73 0.092131
Target:  5'- uCCGcgUGCCaGGGcuUGGCCAGaagauGGCGCCg -3'
miRNA:   3'- -GGCa-ACGGcCCC--ACCGGUUc----CCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 26705 1.12 8.1e-05
Target:  5'- aCCGUUGCCGGGGUGGCCAAGGGCGCCu -3'
miRNA:   3'- -GGCAACGGCCCCACCGGUUCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 23694 0.66 0.324147
Target:  5'- aCCcaUGCCGGcaagccGGUGGCgcAGGGCGaCg -3'
miRNA:   3'- -GGcaACGGCC------CCACCGguUCCCGCgG- -5'
23151 5' -62.1 NC_005178.1 + 14184 0.66 0.315737
Target:  5'- gCGgaGCUGGaGUucaauccgcgccuGGCCAuggacuucccccAGGGCGCCg -3'
miRNA:   3'- gGCaaCGGCCcCA-------------CCGGU------------UCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 31395 0.66 0.30898
Target:  5'- gCUGUUugGCUGGGGcGcGCgCGuuuGGGCGCUg -3'
miRNA:   3'- -GGCAA--CGGCCCCaC-CG-GUu--CCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 28113 0.66 0.301602
Target:  5'- uCCGgguuugGCCugGGcGGUGGCaccgauGGcGGCGCCc -3'
miRNA:   3'- -GGCaa----CGG--CC-CCACCGgu----UC-CCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 26181 0.66 0.29436
Target:  5'- ----gGCgCGGcGGUGGCCGcugcGGGCGUg -3'
miRNA:   3'- ggcaaCG-GCC-CCACCGGUu---CCCGCGg -5'
23151 5' -62.1 NC_005178.1 + 17316 0.66 0.29436
Target:  5'- -gGUUGCgccggaCGGcGG-GGCCGAGGuCGCCc -3'
miRNA:   3'- ggCAACG------GCC-CCaCCGGUUCCcGCGG- -5'
23151 5' -62.1 NC_005178.1 + 6517 0.67 0.273451
Target:  5'- aCCGUgcGCauGcGGuUGGCCAAGGGaauGCCu -3'
miRNA:   3'- -GGCAa-CGgcC-CC-ACCGGUUCCCg--CGG- -5'
23151 5' -62.1 NC_005178.1 + 10322 0.67 0.253749
Target:  5'- gCCGaggGCCGGGcGcggaggGGCgAAGcGCGCCg -3'
miRNA:   3'- -GGCaa-CGGCCC-Ca-----CCGgUUCcCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 17156 0.68 0.235229
Target:  5'- cCCGagcGCUGacGGUGGCCAA-GGCGUCa -3'
miRNA:   3'- -GGCaa-CGGCc-CCACCGGUUcCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 3760 0.68 0.229312
Target:  5'- ----cGCCGGGccaucGCCAAGGGCGgCa -3'
miRNA:   3'- ggcaaCGGCCCcac--CGGUUCCCGCgG- -5'
23151 5' -62.1 NC_005178.1 + 26811 0.68 0.22295
Target:  5'- ----aGCCGGGacgcgcuGUGGCCAgcGGGGCuGUCu -3'
miRNA:   3'- ggcaaCGGCCC-------CACCGGU--UCCCG-CGG- -5'
23151 5' -62.1 NC_005178.1 + 24409 0.68 0.212314
Target:  5'- aCCGUUGCCcugcgcuauaaGGGcaucaaccUGGCCGAaggcGGcGCGCCg -3'
miRNA:   3'- -GGCAACGG-----------CCCc-------ACCGGUU----CC-CGCGG- -5'
23151 5' -62.1 NC_005178.1 + 12100 0.68 0.206894
Target:  5'- gUCGcgUGgCGGGccUGGCCGAuGGGCGCg -3'
miRNA:   3'- -GGCa-ACgGCCCc-ACCGGUU-CCCGCGg -5'
23151 5' -62.1 NC_005178.1 + 8750 0.69 0.186395
Target:  5'- gCCcUUGCCGuGGGcgacuUGGCCAGcgugcGGGCGgCg -3'
miRNA:   3'- -GGcAACGGC-CCC-----ACCGGUU-----CCCGCgG- -5'
23151 5' -62.1 NC_005178.1 + 23440 0.69 0.176833
Target:  5'- gCCGacGCCcaGGGcgacGGCC-AGGGCGCCc -3'
miRNA:   3'- -GGCaaCGGc-CCCa---CCGGuUCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 36037 0.7 0.165055
Target:  5'- aCCGggGCCGGGGcgaaccagaaccgcuUGGCCcgcuggugggcAAcGGGUGCg -3'
miRNA:   3'- -GGCaaCGGCCCC---------------ACCGG-----------UU-CCCGCGg -5'
23151 5' -62.1 NC_005178.1 + 8123 0.68 0.235229
Target:  5'- uUCGgUGaCCa-GGUGcCCGAGGGCGCCa -3'
miRNA:   3'- -GGCaAC-GGccCCACcGGUUCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 24277 0.67 0.246823
Target:  5'- cUCGgcGCCccGGUGGUUGuguccacAGGGCGCCg -3'
miRNA:   3'- -GGCaaCGGccCCACCGGU-------UCCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.