miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23152 5' -56.7 NC_005178.1 + 21838 0.66 0.529181
Target:  5'- cGagGCGUuGCGCGGCGGcucgaUGGUCc -3'
miRNA:   3'- aCagCGCGuCGCGCCGCUug---ACUAGu -5'
23152 5' -56.7 NC_005178.1 + 10352 0.66 0.529181
Target:  5'- cGcCGgGCuGCGCuGGCcGAGCUGGUgGg -3'
miRNA:   3'- aCaGCgCGuCGCG-CCG-CUUGACUAgU- -5'
23152 5' -56.7 NC_005178.1 + 25955 0.66 0.518363
Target:  5'- gGUUGCcaucCAGCaaGGCGGGCaGAUCAa -3'
miRNA:   3'- aCAGCGc---GUCGcgCCGCUUGaCUAGU- -5'
23152 5' -56.7 NC_005178.1 + 26457 0.66 0.486464
Target:  5'- ---aGCGCGGCGCugccggccgaGGUGGAUgcggGAUCAg -3'
miRNA:   3'- acagCGCGUCGCG----------CCGCUUGa---CUAGU- -5'
23152 5' -56.7 NC_005178.1 + 25431 0.67 0.476038
Target:  5'- cGUCgGCGCAG-GCGGCGcGCccAUCGg -3'
miRNA:   3'- aCAG-CGCGUCgCGCCGCuUGacUAGU- -5'
23152 5' -56.7 NC_005178.1 + 27980 0.68 0.397032
Target:  5'- ---aGCGCAGCGCGGCGcaggGcAUCGc -3'
miRNA:   3'- acagCGCGUCGCGCCGCuugaC-UAGU- -5'
23152 5' -56.7 NC_005178.1 + 29352 0.68 0.387762
Target:  5'- uUGUCGUaaGC-GUGCcGCGAAUUGGUCAc -3'
miRNA:   3'- -ACAGCG--CGuCGCGcCGCUUGACUAGU- -5'
23152 5' -56.7 NC_005178.1 + 10132 0.68 0.369653
Target:  5'- uUGUCGCGCAGCGCcuccaGCGc-CUGGa-- -3'
miRNA:   3'- -ACAGCGCGUCGCGc----CGCuuGACUagu -5'
23152 5' -56.7 NC_005178.1 + 7748 0.69 0.335207
Target:  5'- --aCGCGCAGCuuGGCGAGCaaGUCGg -3'
miRNA:   3'- acaGCGCGUCGcgCCGCUUGacUAGU- -5'
23152 5' -56.7 NC_005178.1 + 21100 0.69 0.32697
Target:  5'- -aUCGCGacuCAGCgugGCGGCGAGCUGG-CGg -3'
miRNA:   3'- acAGCGC---GUCG---CGCCGCUUGACUaGU- -5'
23152 5' -56.7 NC_005178.1 + 28510 0.7 0.318884
Target:  5'- ---aGCGCGGCGCGGCauuGCUccaGGUCGa -3'
miRNA:   3'- acagCGCGUCGCGCCGcu-UGA---CUAGU- -5'
23152 5' -56.7 NC_005178.1 + 12074 0.7 0.303166
Target:  5'- gGUUGCGacCAGCGCcuGGUGGAgUGGUCGc -3'
miRNA:   3'- aCAGCGC--GUCGCG--CCGCUUgACUAGU- -5'
23152 5' -56.7 NC_005178.1 + 13164 0.71 0.266498
Target:  5'- gGUCGgcUGCGGCGCGGUGAACa----- -3'
miRNA:   3'- aCAGC--GCGUCGCGCCGCUUGacuagu -5'
23152 5' -56.7 NC_005178.1 + 5564 0.71 0.237906
Target:  5'- cGUCGagGCgauccgcggauucaAGCGCGGCGAAgaGGUCGu -3'
miRNA:   3'- aCAGCg-CG--------------UCGCGCCGCUUgaCUAGU- -5'
23152 5' -56.7 NC_005178.1 + 14916 0.72 0.233502
Target:  5'- cGUUGUGCucggcguucuGCGCGGCGA--UGGUCAg -3'
miRNA:   3'- aCAGCGCGu---------CGCGCCGCUugACUAGU- -5'
23152 5' -56.7 NC_005178.1 + 17984 0.73 0.20401
Target:  5'- cGgcgCGUGUAGCGCGuuuGCGGGCgGAUCAg -3'
miRNA:   3'- aCa--GCGCGUCGCGC---CGCUUGaCUAGU- -5'
23152 5' -56.7 NC_005178.1 + 4971 0.73 0.193146
Target:  5'- gGUCggccgGUGCGGUGauGCGAACUGGUCGg -3'
miRNA:   3'- aCAG-----CGCGUCGCgcCGCUUGACUAGU- -5'
23152 5' -56.7 NC_005178.1 + 4369 0.73 0.186359
Target:  5'- gGUCGCGCAGCGCcGCGAcccuugaagugcagGCcgagcgGAUCGa -3'
miRNA:   3'- aCAGCGCGUCGCGcCGCU--------------UGa-----CUAGU- -5'
23152 5' -56.7 NC_005178.1 + 12461 0.75 0.130453
Target:  5'- cUGUCGCuCGGUguaGCGGcCGAGCUGGUCGc -3'
miRNA:   3'- -ACAGCGcGUCG---CGCC-GCUUGACUAGU- -5'
23152 5' -56.7 NC_005178.1 + 27347 1.09 0.000415
Target:  5'- aUGUCGCGCAGCGCGGCGAACUGAUCAg -3'
miRNA:   3'- -ACAGCGCGUCGCGCCGCUUGACUAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.