miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23154 3' -54.2 NC_005178.1 + 1147 0.68 0.495957
Target:  5'- cCGUUCCA-CGGCGAgAGGAacGUGCUGg -3'
miRNA:   3'- -GCGAGGUcGUUGUUgUCCUa-CGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 2446 0.66 0.654595
Target:  5'- gGCcgCCAGCGGCAGCucGGcgGCGa-- -3'
miRNA:   3'- gCGa-GGUCGUUGUUGu-CCuaCGCgac -5'
23154 3' -54.2 NC_005178.1 + 4483 0.68 0.506846
Target:  5'- cCGC-CCAGCGcuacCGGCAGuGGUGCgaGCUGg -3'
miRNA:   3'- -GCGaGGUCGUu---GUUGUC-CUACG--CGAC- -5'
23154 3' -54.2 NC_005178.1 + 5661 0.66 0.59694
Target:  5'- gCGCcaucCCGGCGACGucggucacGCGGGGaaucGCGCUGc -3'
miRNA:   3'- -GCGa---GGUCGUUGU--------UGUCCUa---CGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 7311 0.71 0.339437
Target:  5'- uGCUCCAGC-GCAugGGGGUcCGCc- -3'
miRNA:   3'- gCGAGGUCGuUGUugUCCUAcGCGac -5'
23154 3' -54.2 NC_005178.1 + 13889 0.7 0.393816
Target:  5'- cCGC-CCGGCGugAACGGGccaGCGCg- -3'
miRNA:   3'- -GCGaGGUCGUugUUGUCCua-CGCGac -5'
23154 3' -54.2 NC_005178.1 + 14301 0.75 0.182483
Target:  5'- gGCUCCGGCAA--GC-GGAUGCGCg- -3'
miRNA:   3'- gCGAGGUCGUUguUGuCCUACGCGac -5'
23154 3' -54.2 NC_005178.1 + 16769 0.68 0.506846
Target:  5'- aCGCUaCC-GCGAU--CAGGAaGCGCUGg -3'
miRNA:   3'- -GCGA-GGuCGUUGuuGUCCUaCGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 19438 0.67 0.540088
Target:  5'- aCGCUCCcacAGCAccAUGGCGGGcugggccagGCGCUGc -3'
miRNA:   3'- -GCGAGG---UCGU--UGUUGUCCua-------CGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 19988 0.67 0.582031
Target:  5'- gGCaCCGGCAguuguagccauucgGCGGCAuGAUGUGCUGc -3'
miRNA:   3'- gCGaGGUCGU--------------UGUUGUcCUACGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 20286 0.72 0.314363
Target:  5'- gGcCUCCAGgauCGGCcGCAGGuUGCGCUGg -3'
miRNA:   3'- gC-GAGGUC---GUUGuUGUCCuACGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 20559 0.66 0.643064
Target:  5'- aGCUCCAG-GGC--CAGGucgcgGCGCUGa -3'
miRNA:   3'- gCGAGGUCgUUGuuGUCCua---CGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 21782 0.66 0.619979
Target:  5'- aCGCcagCCAgGCGGCGgcgaagGCAGGuuaugGCGCUGc -3'
miRNA:   3'- -GCGa--GGU-CGUUGU------UGUCCua---CGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 24369 0.69 0.462909
Target:  5'- gGCUCCAGCAccuCGGCGaaugccuGGgcGUGCUGc -3'
miRNA:   3'- gCGAGGUCGUu--GUUGU-------CCuaCGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 24968 0.67 0.574033
Target:  5'- gCGCUCCAG--GCGGCcgucGAUGCGUUGc -3'
miRNA:   3'- -GCGAGGUCguUGUUGuc--CUACGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 25436 0.83 0.057534
Target:  5'- cCGcCUCCcuGCAACAGCGGGAaGCGCUGg -3'
miRNA:   3'- -GC-GAGGu-CGUUGUUGUCCUaCGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 25802 0.75 0.198583
Target:  5'- aGCUCCAGgAGCAACGGGAccGC-CUGc -3'
miRNA:   3'- gCGAGGUCgUUGUUGUCCUa-CGcGAC- -5'
23154 3' -54.2 NC_005178.1 + 26930 0.68 0.528918
Target:  5'- gCGCcCCGGCuuaGugGACAGGGUGgauUGCUGc -3'
miRNA:   3'- -GCGaGGUCG---UugUUGUCCUAC---GCGAC- -5'
23154 3' -54.2 NC_005178.1 + 27497 0.71 0.348111
Target:  5'- aGCUCCAGgGGCGAUGG---GCGCUGg -3'
miRNA:   3'- gCGAGGUCgUUGUUGUCcuaCGCGAC- -5'
23154 3' -54.2 NC_005178.1 + 27613 1.09 0.000607
Target:  5'- gCGCUCCAGCAACAACAGGAUGCGCUGg -3'
miRNA:   3'- -GCGAGGUCGUUGUUGUCCUACGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.