miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23162 5' -59.5 NC_005178.1 + 37468 0.69 0.236162
Target:  5'- gGCCGaguucagCCUCACCGaggaccagcgcgaauGCAUCGAGCa -3'
miRNA:   3'- gCGGCgua----GGAGUGGU---------------CGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 36288 0.66 0.375927
Target:  5'- uGCCGCuucggguuGUCCUCGucaauCCAGCguucggGCCaGAGCUu -3'
miRNA:   3'- gCGGCG--------UAGGAGU-----GGUCG------UGG-CUCGA- -5'
23162 5' -59.5 NC_005178.1 + 35561 0.68 0.273012
Target:  5'- gGCCGCGaCCUCu---GCugCGAGCg -3'
miRNA:   3'- gCGGCGUaGGAGugguCGugGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 33016 0.7 0.193436
Target:  5'- aCGCCGgacccgaucuuuaCAUCCUgGgCGGCACCGAGg- -3'
miRNA:   3'- -GCGGC-------------GUAGGAgUgGUCGUGGCUCga -5'
23162 5' -59.5 NC_005178.1 + 32917 0.66 0.384851
Target:  5'- aGCgGCGUggUCGCCGGCauGCCGAugGCUg -3'
miRNA:   3'- gCGgCGUAggAGUGGUCG--UGGCU--CGA- -5'
23162 5' -59.5 NC_005178.1 + 32884 0.66 0.350004
Target:  5'- aCGCCGCAgag-CAUCAGCGgCUGGGUg -3'
miRNA:   3'- -GCGGCGUaggaGUGGUCGU-GGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 32171 1.08 0.000255
Target:  5'- cCGCCGCAUCCUCACCAGCACCGAGCUg -3'
miRNA:   3'- -GCGGCGUAGGAGUGGUCGUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 31296 0.66 0.367143
Target:  5'- aGCCGUGa---C-CCAGCGCCGGGCUa -3'
miRNA:   3'- gCGGCGUaggaGuGGUCGUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 31145 0.67 0.333442
Target:  5'- uCGCgGCGcgCCUCGCCGcGacaAUCGAGCg -3'
miRNA:   3'- -GCGgCGUa-GGAGUGGU-Cg--UGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 30605 0.66 0.364536
Target:  5'- uGCCGauugCCUCGCCGgcuuucgucuggcuGCugCGGGCc -3'
miRNA:   3'- gCGGCgua-GGAGUGGU--------------CGugGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 30460 0.67 0.305097
Target:  5'- uCGCUGCAcUcgaccgaggucaccgCCUCGcCCAGgGCCGGGCa -3'
miRNA:   3'- -GCGGCGU-A---------------GGAGU-GGUCgUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 28249 0.68 0.266108
Target:  5'- cCGCUGCcgCCUCGCUGGcCGCCGccaauGGUg -3'
miRNA:   3'- -GCGGCGuaGGAGUGGUC-GUGGC-----UCGa -5'
23162 5' -59.5 NC_005178.1 + 28187 0.73 0.117897
Target:  5'- uGCUGCGguUCCUCACCGcgagcGCGCCGuGCc -3'
miRNA:   3'- gCGGCGU--AGGAGUGGU-----CGUGGCuCGa -5'
23162 5' -59.5 NC_005178.1 + 28175 0.67 0.302064
Target:  5'- gGCUGUAUCCgccucgGCCGGCGCCcuGGCg -3'
miRNA:   3'- gCGGCGUAGGag----UGGUCGUGGc-UCGa -5'
23162 5' -59.5 NC_005178.1 + 25643 0.68 0.287249
Target:  5'- cCGCCGaGUUCg-ACCGGCagcagGCCGAGCUg -3'
miRNA:   3'- -GCGGCgUAGGagUGGUCG-----UGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 24878 0.68 0.262034
Target:  5'- gGCCGCAggcaaccaggccacCCgccagcgCGCCGGcCGCCGAGCc -3'
miRNA:   3'- gCGGCGUa-------------GGa------GUGGUC-GUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 22674 0.68 0.280059
Target:  5'- aGCCcaggGCGaCCUCGcCCAG-GCCGAGCUg -3'
miRNA:   3'- gCGG----CGUaGGAGU-GGUCgUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 20756 0.66 0.367143
Target:  5'- gGCCgGCAggCUgGCCAGCACCuGGUc -3'
miRNA:   3'- gCGG-CGUagGAgUGGUCGUGGcUCGa -5'
23162 5' -59.5 NC_005178.1 + 20736 0.71 0.164732
Target:  5'- uCGCCGC--CCUgACCcaacagcagAGCGCCGGGCg -3'
miRNA:   3'- -GCGGCGuaGGAgUGG---------UCGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 20631 0.67 0.320611
Target:  5'- gCGCUGuCGUCCauauccgggaaugccUCgGCCagGGCGCCGAGCa -3'
miRNA:   3'- -GCGGC-GUAGG---------------AG-UGG--UCGUGGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.