miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23162 5' -59.5 NC_005178.1 + 11087 0.66 0.367143
Target:  5'- -cCCGCAUCCaccucggcCGgCAGCGCCGcGCUg -3'
miRNA:   3'- gcGGCGUAGGa-------GUgGUCGUGGCuCGA- -5'
23162 5' -59.5 NC_005178.1 + 25643 0.68 0.287249
Target:  5'- cCGCCGaGUUCg-ACCGGCagcagGCCGAGCUg -3'
miRNA:   3'- -GCGGCgUAGGagUGGUCG-----UGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 2959 0.68 0.294584
Target:  5'- gGcCCGCgAUCCUCGCgGccGC-CCGAGCg -3'
miRNA:   3'- gC-GGCG-UAGGAGUGgU--CGuGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 28175 0.67 0.302064
Target:  5'- gGCUGUAUCCgccucgGCCGGCGCCcuGGCg -3'
miRNA:   3'- gCGGCGUAGGag----UGGUCGUGGc-UCGa -5'
23162 5' -59.5 NC_005178.1 + 16854 0.67 0.344975
Target:  5'- gCGCCGC-UCCUgGaugugaUCAGCcgcggagguagcgagGCCGAGCUg -3'
miRNA:   3'- -GCGGCGuAGGAgU------GGUCG---------------UGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 32884 0.66 0.350004
Target:  5'- aCGCCGCAgag-CAUCAGCGgCUGGGUg -3'
miRNA:   3'- -GCGGCGUaggaGUGGUCGU-GGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 5740 0.66 0.361941
Target:  5'- uCGCCGCAUcgguggcggCCUCgggcacgaccgugucGcCCAGCACCGuucAGCg -3'
miRNA:   3'- -GCGGCGUA---------GGAG---------------U-GGUCGUGGC---UCGa -5'
23162 5' -59.5 NC_005178.1 + 20572 0.66 0.361941
Target:  5'- gGUCGCGgcgcugaccucucgCCUCAaCGGCGgCGAGCUg -3'
miRNA:   3'- gCGGCGUa-------------GGAGUgGUCGUgGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 31296 0.66 0.367143
Target:  5'- aGCCGUGa---C-CCAGCGCCGGGCUa -3'
miRNA:   3'- gCGGCGUaggaGuGGUCGUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 22674 0.68 0.280059
Target:  5'- aGCCcaggGCGaCCUCGcCCAG-GCCGAGCUg -3'
miRNA:   3'- gCGG----CGUaGGAGU-GGUCgUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 9325 0.68 0.273012
Target:  5'- aCGCCGUuUCCUgCGCCuGCGaCGAGUg -3'
miRNA:   3'- -GCGGCGuAGGA-GUGGuCGUgGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 28249 0.68 0.266108
Target:  5'- cCGCUGCcgCCUCGCUGGcCGCCGccaauGGUg -3'
miRNA:   3'- -GCGGCGuaGGAGUGGUC-GUGGC-----UCGa -5'
23162 5' -59.5 NC_005178.1 + 7038 0.75 0.088668
Target:  5'- gCGUCGUGUCCUgGCC-GCGCUGAGCc -3'
miRNA:   3'- -GCGGCGUAGGAgUGGuCGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 10042 0.73 0.131937
Target:  5'- -aCCGCGcUCCUgGCCAGCGCCcaucgccccugGAGCUa -3'
miRNA:   3'- gcGGCGU-AGGAgUGGUCGUGG-----------CUCGA- -5'
23162 5' -59.5 NC_005178.1 + 4149 0.71 0.164732
Target:  5'- gGCCGCuUCCUCugCAcCGCaGAGCUg -3'
miRNA:   3'- gCGGCGuAGGAGugGUcGUGgCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 20736 0.71 0.164732
Target:  5'- uCGCCGC--CCUgACCcaacagcagAGCGCCGGGCg -3'
miRNA:   3'- -GCGGCGuaGGAgUGG---------UCGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 33016 0.7 0.193436
Target:  5'- aCGCCGgacccgaucuuuaCAUCCUgGgCGGCACCGAGg- -3'
miRNA:   3'- -GCGGC-------------GUAGGAgUgGUCGUGGCUCga -5'
23162 5' -59.5 NC_005178.1 + 10788 0.7 0.199251
Target:  5'- cCGCCGcCAUCCUgGCCgAGCccaGCCgcGAGCg -3'
miRNA:   3'- -GCGGC-GUAGGAgUGG-UCG---UGG--CUCGa -5'
23162 5' -59.5 NC_005178.1 + 37468 0.69 0.236162
Target:  5'- gGCCGaguucagCCUCACCGaggaccagcgcgaauGCAUCGAGCa -3'
miRNA:   3'- gCGGCgua----GGAGUGGU---------------CGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 8693 0.69 0.252725
Target:  5'- uGCCGCAUcgauggCCUCAUCgAGCugCGGGa- -3'
miRNA:   3'- gCGGCGUA------GGAGUGG-UCGugGCUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.