Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23162 | 5' | -59.5 | NC_005178.1 | + | 15647 | 0.74 | 0.099427 |
Target: 5'- aGCaGCAUCUUCGCCacgucuuccAGCGCCGGGCc -3' miRNA: 3'- gCGgCGUAGGAGUGG---------UCGUGGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 20631 | 0.67 | 0.320611 |
Target: 5'- gCGCUGuCGUCCauauccgggaaugccUCgGCCagGGCGCCGAGCa -3' miRNA: 3'- -GCGGC-GUAGG---------------AG-UGG--UCGUGGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 17109 | 0.68 | 0.280059 |
Target: 5'- aCGuCCGCGUCCUgGgCCAG-GCCGAGg- -3' miRNA: 3'- -GC-GGCGUAGGAgU-GGUCgUGGCUCga -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 35561 | 0.68 | 0.273012 |
Target: 5'- gGCCGCGaCCUCu---GCugCGAGCg -3' miRNA: 3'- gCGGCGUaGGAGugguCGugGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 15774 | 0.69 | 0.233696 |
Target: 5'- uCGCCGCcgCCUgGCUGGCguuggaaaGCgGAGCg -3' miRNA: 3'- -GCGGCGuaGGAgUGGUCG--------UGgCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 494 | 0.69 | 0.221689 |
Target: 5'- uGCUGCcgCCUCGuCCAGCgaGCCG-GCc -3' miRNA: 3'- gCGGCGuaGGAGU-GGUCG--UGGCuCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 36288 | 0.66 | 0.375927 |
Target: 5'- uGCCGCuucggguuGUCCUCGucaauCCAGCguucggGCCaGAGCUu -3' miRNA: 3'- gCGGCG--------UAGGAGU-----GGUCG------UGG-CUCGA- -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 9039 | 0.66 | 0.358502 |
Target: 5'- gCGCCGCccAUCCUCGuugguugauguCCAGCAgC-AGCg -3' miRNA: 3'- -GCGGCG--UAGGAGU-----------GGUCGUgGcUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 3622 | 0.67 | 0.317461 |
Target: 5'- aCGCCcCGgaaagCCggCACCAGgcCGCCGAGCa -3' miRNA: 3'- -GCGGcGUa----GGa-GUGGUC--GUGGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 24878 | 0.68 | 0.262034 |
Target: 5'- gGCCGCAggcaaccaggccacCCgccagcgCGCCGGcCGCCGAGCc -3' miRNA: 3'- gCGGCGUa-------------GGa------GUGGUC-GUGGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 28187 | 0.73 | 0.117897 |
Target: 5'- uGCUGCGguUCCUCACCGcgagcGCGCCGuGCc -3' miRNA: 3'- gCGGCGU--AGGAGUGGU-----CGUGGCuCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 30605 | 0.66 | 0.364536 |
Target: 5'- uGCCGauugCCUCGCCGgcuuucgucuggcuGCugCGGGCc -3' miRNA: 3'- gCGGCgua-GGAGUGGU--------------CGugGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 5799 | 0.71 | 0.160263 |
Target: 5'- uCGCCgGCAUuaCCUCggGCCAgGCGCUGGGCUc -3' miRNA: 3'- -GCGG-CGUA--GGAG--UGGU-CGUGGCUCGA- -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 30460 | 0.67 | 0.305097 |
Target: 5'- uCGCUGCAcUcgaccgaggucaccgCCUCGcCCAGgGCCGGGCa -3' miRNA: 3'- -GCGGCGU-A---------------GGAGU-GGUCgUGGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 20756 | 0.66 | 0.367143 |
Target: 5'- gGCCgGCAggCUgGCCAGCACCuGGUc -3' miRNA: 3'- gCGG-CGUagGAgUGGUCGUGGcUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 19475 | 0.7 | 0.215885 |
Target: 5'- uGCgGCAggUUCGCCAGCugcucgcgagcgACCGGGCUg -3' miRNA: 3'- gCGgCGUagGAGUGGUCG------------UGGCUCGA- -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 31145 | 0.67 | 0.333442 |
Target: 5'- uCGCgGCGcgCCUCGCCGcGacaAUCGAGCg -3' miRNA: 3'- -GCGgCGUa-GGAGUGGU-Cg--UGGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 28175 | 0.67 | 0.302064 |
Target: 5'- gGCUGUAUCCgccucgGCCGGCGCCcuGGCg -3' miRNA: 3'- gCGGCGUAGGag----UGGUCGUGGc-UCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 2959 | 0.68 | 0.294584 |
Target: 5'- gGcCCGCgAUCCUCGCgGccGC-CCGAGCg -3' miRNA: 3'- gC-GGCG-UAGGAGUGgU--CGuGGCUCGa -5' |
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23162 | 5' | -59.5 | NC_005178.1 | + | 25643 | 0.68 | 0.287249 |
Target: 5'- cCGCCGaGUUCg-ACCGGCagcagGCCGAGCUg -3' miRNA: 3'- -GCGGCgUAGGagUGGUCG-----UGGCUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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