Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 17603 | 0.67 | 0.358361 |
|
Target: 5'- --cGGCgGCCGCUgugcgucGCCGugGUcugacGGUCGAg -3' miRNA: 3'- acaUCG-CGGCGG-------UGGCugCA-----CCAGCU- -5' |
|||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 32014 | 0.67 | 0.359212 |
|
Target: 5'- --gGGUGCCGacccaCGCCGACGaccugacccUGGUCGc -3' miRNA: 3'- acaUCGCGGCg----GUGGCUGC---------ACCAGCu -5' |
|||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 10432 | 0.67 | 0.385391 |
|
Target: 5'- cGUGGCucGCUGCCACaaGGCGcUGGUaCGGu -3' miRNA: 3'- aCAUCG--CGGCGGUGg-CUGC-ACCA-GCU- -5' |
|||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 17852 | 0.67 | 0.385391 |
|
Target: 5'- --gAGCGCCuGCCGCCcucGGCGaGGUCc- -3' miRNA: 3'- acaUCGCGG-CGGUGG---CUGCaCCAGcu -5' |
|||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 20988 | 0.66 | 0.4128 |
|
Target: 5'- cGUGGCGaaCGCUACCGGguucgcCGUGGgCGGc -3' miRNA: 3'- aCAUCGCg-GCGGUGGCU------GCACCaGCU- -5' |
|||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 4988 | 0.66 | 0.441381 |
|
Target: 5'- ----cUGUCGCCGCUGGCcaGGUCGAg -3' miRNA: 3'- acaucGCGGCGGUGGCUGcaCCAGCU- -5' |
|||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 6504 | 0.66 | 0.451155 |
|
Target: 5'- gGUcacCGCCGCCACCGuGCGcaugcGGUUGGc -3' miRNA: 3'- aCAuc-GCGGCGGUGGC-UGCa----CCAGCU- -5' |
|||||||
| 23163 | 3' | -58.9 | NC_005178.1 | + | 32288 | 1.08 | 0.000314 |
|
Target: 5'- cUGUAGCGCCGCCACCGACGUGGUCGAg -3' miRNA: 3'- -ACAUCGCGGCGGUGGCUGCACCAGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home