miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23163 3' -58.9 NC_005178.1 + 32288 1.08 0.000314
Target:  5'- cUGUAGCGCCGCCACCGACGUGGUCGAg -3'
miRNA:   3'- -ACAUCGCGGCGGUGGCUGCACCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 9034 0.74 0.119242
Target:  5'- aUGUAGCGCCGCCcauCCu-CGuUGGUUGAu -3'
miRNA:   3'- -ACAUCGCGGCGGu--GGcuGC-ACCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 21183 0.74 0.126098
Target:  5'- cGUAgGCGCCGCCGcCCGACucgcUGGUCu- -3'
miRNA:   3'- aCAU-CGCGGCGGU-GGCUGc---ACCAGcu -5'
23163 3' -58.9 NC_005178.1 + 25901 0.73 0.148909
Target:  5'- --cGGCGCagaUCACCGACGUGGUCa- -3'
miRNA:   3'- acaUCGCGgc-GGUGGCUGCACCAGcu -5'
23163 3' -58.9 NC_005178.1 + 2515 0.73 0.153059
Target:  5'- ---cGCGCCagaGCUGCCGACGcGGUCGGu -3'
miRNA:   3'- acauCGCGG---CGGUGGCUGCaCCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 26461 0.72 0.170724
Target:  5'- --cGGCGCUGCCgGCCGAgGUGGaugCGGg -3'
miRNA:   3'- acaUCGCGGCGG-UGGCUgCACCa--GCU- -5'
23163 3' -58.9 NC_005178.1 + 13116 0.71 0.19535
Target:  5'- cGgcGCGCCGCCuuCGGCcaGGUUGAu -3'
miRNA:   3'- aCauCGCGGCGGugGCUGcaCCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 34836 0.71 0.19535
Target:  5'- cGUGGCGCCGCCACCacCG-GGcUGGa -3'
miRNA:   3'- aCAUCGCGGCGGUGGcuGCaCCaGCU- -5'
23163 3' -58.9 NC_005178.1 + 31815 0.7 0.235
Target:  5'- --gAG-GCCGCCACCGAUGcGG-CGAu -3'
miRNA:   3'- acaUCgCGGCGGUGGCUGCaCCaGCU- -5'
23163 3' -58.9 NC_005178.1 + 7091 0.69 0.260564
Target:  5'- -aUGGCGCaCGgCACC-ACGuUGGUCGAg -3'
miRNA:   3'- acAUCGCG-GCgGUGGcUGC-ACCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 5991 0.69 0.260564
Target:  5'- --gGGCGCUGCCccagGCUGGCGUG-UCGGa -3'
miRNA:   3'- acaUCGCGGCGG----UGGCUGCACcAGCU- -5'
23163 3' -58.9 NC_005178.1 + 32211 0.68 0.30611
Target:  5'- --gAGCGUUugGCCAUCGACGccgcccugggccgccUGGUCGAg -3'
miRNA:   3'- acaUCGCGG--CGGUGGCUGC---------------ACCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 6736 0.68 0.31068
Target:  5'- ---uGCGCCGCguagaCGCCGGCccaGGUCGAg -3'
miRNA:   3'- acauCGCGGCG-----GUGGCUGca-CCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 27655 0.68 0.31841
Target:  5'- ---cGUGCCGCCGCUGcCGUGGgcaUGGg -3'
miRNA:   3'- acauCGCGGCGGUGGCuGCACCa--GCU- -5'
23163 3' -58.9 NC_005178.1 + 22282 0.68 0.326284
Target:  5'- --gGGCGUCgggGCCAUCGuCGUGGUCu- -3'
miRNA:   3'- acaUCGCGG---CGGUGGCuGCACCAGcu -5'
23163 3' -58.9 NC_005178.1 + 10106 0.68 0.342463
Target:  5'- ---uGCGCUggGCCGCCGugGUGGa--- -3'
miRNA:   3'- acauCGCGG--CGGUGGCugCACCagcu -5'
23163 3' -58.9 NC_005178.1 + 17782 0.67 0.34826
Target:  5'- gUGUAGgcgguucuucuucaUGCCGCCAUgGugGcgacGGUCGAg -3'
miRNA:   3'- -ACAUC--------------GCGGCGGUGgCugCa---CCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 16176 0.67 0.350766
Target:  5'- gGUGGUggggGCCGCCGCgaaGGCGUuGUUGAa -3'
miRNA:   3'- aCAUCG----CGGCGGUGg--CUGCAcCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 17603 0.67 0.358361
Target:  5'- --cGGCgGCCGCUgugcgucGCCGugGUcugacGGUCGAg -3'
miRNA:   3'- acaUCG-CGGCGG-------UGGCugCA-----CCAGCU- -5'
23163 3' -58.9 NC_005178.1 + 32014 0.67 0.359212
Target:  5'- --gGGUGCCGacccaCGCCGACGaccugacccUGGUCGc -3'
miRNA:   3'- acaUCGCGGCg----GUGGCUGC---------ACCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.