Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23163 | 3' | -58.9 | NC_005178.1 | + | 32288 | 1.08 | 0.000314 |
Target: 5'- cUGUAGCGCCGCCACCGACGUGGUCGAg -3' miRNA: 3'- -ACAUCGCGGCGGUGGCUGCACCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 31583 | 0.66 | 0.451155 |
Target: 5'- --cAGUGaCCGCCGCCGGCcuggaccUGGUCc- -3' miRNA: 3'- acaUCGC-GGCGGUGGCUGc------ACCAGcu -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 6504 | 0.66 | 0.451155 |
Target: 5'- gGUcacCGCCGCCACCGuGCGcaugcGGUUGGc -3' miRNA: 3'- aCAuc-GCGGCGGUGGC-UGCa----CCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 4988 | 0.66 | 0.441381 |
Target: 5'- ----cUGUCGCCGCUGGCcaGGUCGAg -3' miRNA: 3'- acaucGCGGCGGUGGCUGcaCCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 20988 | 0.66 | 0.4128 |
Target: 5'- cGUGGCGaaCGCUACCGGguucgcCGUGGgCGGc -3' miRNA: 3'- aCAUCGCg-GCGGUGGCU------GCACCaGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 17852 | 0.67 | 0.385391 |
Target: 5'- --gAGCGCCuGCCGCCcucGGCGaGGUCc- -3' miRNA: 3'- acaUCGCGG-CGGUGG---CUGCaCCAGcu -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 10432 | 0.67 | 0.385391 |
Target: 5'- cGUGGCucGCUGCCACaaGGCGcUGGUaCGGu -3' miRNA: 3'- aCAUCG--CGGCGGUGg-CUGC-ACCA-GCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 32014 | 0.67 | 0.359212 |
Target: 5'- --gGGUGCCGacccaCGCCGACGaccugacccUGGUCGc -3' miRNA: 3'- acaUCGCGGCg----GUGGCUGC---------ACCAGCu -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 17603 | 0.67 | 0.358361 |
Target: 5'- --cGGCgGCCGCUgugcgucGCCGugGUcugacGGUCGAg -3' miRNA: 3'- acaUCG-CGGCGG-------UGGCugCA-----CCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 27655 | 0.68 | 0.31841 |
Target: 5'- ---cGUGCCGCCGCUGcCGUGGgcaUGGg -3' miRNA: 3'- acauCGCGGCGGUGGCuGCACCa--GCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 32211 | 0.68 | 0.30611 |
Target: 5'- --gAGCGUUugGCCAUCGACGccgcccugggccgccUGGUCGAg -3' miRNA: 3'- acaUCGCGG--CGGUGGCUGC---------------ACCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 5991 | 0.69 | 0.260564 |
Target: 5'- --gGGCGCUGCCccagGCUGGCGUG-UCGGa -3' miRNA: 3'- acaUCGCGGCGG----UGGCUGCACcAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 34836 | 0.71 | 0.19535 |
Target: 5'- cGUGGCGCCGCCACCacCG-GGcUGGa -3' miRNA: 3'- aCAUCGCGGCGGUGGcuGCaCCaGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 25901 | 0.73 | 0.148909 |
Target: 5'- --cGGCGCagaUCACCGACGUGGUCa- -3' miRNA: 3'- acaUCGCGgc-GGUGGCUGCACCAGcu -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 31815 | 0.7 | 0.235 |
Target: 5'- --gAG-GCCGCCACCGAUGcGG-CGAu -3' miRNA: 3'- acaUCgCGGCGGUGGCUGCaCCaGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 13116 | 0.71 | 0.19535 |
Target: 5'- cGgcGCGCCGCCuuCGGCcaGGUUGAu -3' miRNA: 3'- aCauCGCGGCGGugGCUGcaCCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 26461 | 0.72 | 0.170724 |
Target: 5'- --cGGCGCUGCCgGCCGAgGUGGaugCGGg -3' miRNA: 3'- acaUCGCGGCGG-UGGCUgCACCa--GCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 2515 | 0.73 | 0.153059 |
Target: 5'- ---cGCGCCagaGCUGCCGACGcGGUCGGu -3' miRNA: 3'- acauCGCGG---CGGUGGCUGCaCCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 21183 | 0.74 | 0.126098 |
Target: 5'- cGUAgGCGCCGCCGcCCGACucgcUGGUCu- -3' miRNA: 3'- aCAU-CGCGGCGGU-GGCUGc---ACCAGcu -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 16572 | 0.66 | 0.431729 |
Target: 5'- gGUAGCGuUCGCCA-CGACGaUGGcgccggCGAa -3' miRNA: 3'- aCAUCGC-GGCGGUgGCUGC-ACCa-----GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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