miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23164 3' -56.1 NC_005178.1 + 32902 0.66 0.580953
Target:  5'- gGCUGggugaucucCAGcGGCgUGGUCGCCG-GCa -3'
miRNA:   3'- aCGACau-------GUU-CUGgGCCAGCGGCuCG- -5'
23164 3' -56.1 NC_005178.1 + 28713 0.66 0.569847
Target:  5'- gGC-GU-CGGGgcucacACCCGGcacgCGCCGGGCg -3'
miRNA:   3'- aCGaCAuGUUC------UGGGCCa---GCGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 28880 0.66 0.569847
Target:  5'- cGCgaacCcAGACCUGGUCGCggcUGGGCa -3'
miRNA:   3'- aCGacauGuUCUGGGCCAGCG---GCUCG- -5'
23164 3' -56.1 NC_005178.1 + 18057 0.66 0.569847
Target:  5'- ---cGUaACA--GCCCGGUCGCucgCGAGCa -3'
miRNA:   3'- acgaCA-UGUucUGGGCCAGCG---GCUCG- -5'
23164 3' -56.1 NC_005178.1 + 5342 0.66 0.569847
Target:  5'- aGCUGUACAccGGugC-GGcC-CCGAGCc -3'
miRNA:   3'- aCGACAUGU--UCugGgCCaGcGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 16606 0.66 0.558793
Target:  5'- aGCUGggcgucCAGGugCCGGUCaaCUGGGUc -3'
miRNA:   3'- aCGACau----GUUCugGGCCAGc-GGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 17610 0.66 0.5478
Target:  5'- cGCUGUGCGucGCCgUGGUCugacgGUCGAGUc -3'
miRNA:   3'- aCGACAUGUucUGG-GCCAG-----CGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 19107 0.67 0.504593
Target:  5'- gGCUGgacgAUGAGGCUCGcucCGCCGaAGCg -3'
miRNA:   3'- aCGACa---UGUUCUGGGCca-GCGGC-UCG- -5'
23164 3' -56.1 NC_005178.1 + 33710 0.67 0.494016
Target:  5'- cUGCUGUGCGG---CCGGUCGuuGuacucGGCa -3'
miRNA:   3'- -ACGACAUGUUcugGGCCAGCggC-----UCG- -5'
23164 3' -56.1 NC_005178.1 + 332 0.67 0.494016
Target:  5'- gGCUGU-CAGG-UCCGG-CGCUGuGCc -3'
miRNA:   3'- aCGACAuGUUCuGGGCCaGCGGCuCG- -5'
23164 3' -56.1 NC_005178.1 + 8189 0.67 0.490863
Target:  5'- cUGCUGaUGCcccGGugCCGGUCGCuaacgucggaccagCGGGUu -3'
miRNA:   3'- -ACGAC-AUGu--UCugGGCCAGCG--------------GCUCG- -5'
23164 3' -56.1 NC_005178.1 + 12644 0.67 0.483542
Target:  5'- gUGCUGUAC--GGCUCGG-CGgCCG-GCg -3'
miRNA:   3'- -ACGACAUGuuCUGGGCCaGC-GGCuCG- -5'
23164 3' -56.1 NC_005178.1 + 30461 0.67 0.477308
Target:  5'- cGCUGcACucGACCgaGGUCaccgccucgcccaggGCCGGGCa -3'
miRNA:   3'- aCGACaUGuuCUGGg-CCAG---------------CGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 35958 0.67 0.473175
Target:  5'- aGCUcggGCGGGACUCGaccaggCGUCGAGCa -3'
miRNA:   3'- aCGAca-UGUUCUGGGCca----GCGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 7777 0.68 0.452786
Target:  5'- aGUccugGUGCGAGGCCaaccgUGCCGAGCu -3'
miRNA:   3'- aCGa---CAUGUUCUGGgcca-GCGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 34354 0.68 0.452786
Target:  5'- uUGCgcagGaACGcauAGACCUGGUCcagGCUGGGCa -3'
miRNA:   3'- -ACGa---CaUGU---UCUGGGCCAG---CGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 34990 0.68 0.423128
Target:  5'- cGCUGgcCGAGGCgCCGaccagccuGUCGCaGAGCu -3'
miRNA:   3'- aCGACauGUUCUG-GGC--------CAGCGgCUCG- -5'
23164 3' -56.1 NC_005178.1 + 12669 0.69 0.404015
Target:  5'- cGCUG-GCGGGugGCCUGGUUGCCu-GCg -3'
miRNA:   3'- aCGACaUGUUC--UGGGCCAGCGGcuCG- -5'
23164 3' -56.1 NC_005178.1 + 19742 0.69 0.404015
Target:  5'- uUGUUGUACAGcACCUGGUC-CaucaGGGCg -3'
miRNA:   3'- -ACGACAUGUUcUGGGCCAGcGg---CUCG- -5'
23164 3' -56.1 NC_005178.1 + 20444 0.69 0.385458
Target:  5'- gGcCUGgccCAGGACgCGGaCGUCGAGCa -3'
miRNA:   3'- aC-GACau-GUUCUGgGCCaGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.