miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23164 3' -56.1 NC_005178.1 + 28713 0.66 0.569847
Target:  5'- gGC-GU-CGGGgcucacACCCGGcacgCGCCGGGCg -3'
miRNA:   3'- aCGaCAuGUUC------UGGGCCa---GCGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 28880 0.66 0.569847
Target:  5'- cGCgaacCcAGACCUGGUCGCggcUGGGCa -3'
miRNA:   3'- aCGacauGuUCUGGGCCAGCG---GCUCG- -5'
23164 3' -56.1 NC_005178.1 + 30461 0.67 0.477308
Target:  5'- cGCUGcACucGACCgaGGUCaccgccucgcccaggGCCGGGCa -3'
miRNA:   3'- aCGACaUGuuCUGGg-CCAG---------------CGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 32617 1.12 0.0003
Target:  5'- cUGCUGUACAAGACCCGGUCGCCGAGCg -3'
miRNA:   3'- -ACGACAUGUUCUGGGCCAGCGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 32902 0.66 0.580953
Target:  5'- gGCUGggugaucucCAGcGGCgUGGUCGCCG-GCa -3'
miRNA:   3'- aCGACau-------GUU-CUGgGCCAGCGGCuCG- -5'
23164 3' -56.1 NC_005178.1 + 33710 0.67 0.494016
Target:  5'- cUGCUGUGCGG---CCGGUCGuuGuacucGGCa -3'
miRNA:   3'- -ACGACAUGUUcugGGCCAGCggC-----UCG- -5'
23164 3' -56.1 NC_005178.1 + 34354 0.68 0.452786
Target:  5'- uUGCgcagGaACGcauAGACCUGGUCcagGCUGGGCa -3'
miRNA:   3'- -ACGa---CaUGU---UCUGGGCCAG---CGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 34990 0.68 0.423128
Target:  5'- cGCUGgcCGAGGCgCCGaccagccuGUCGCaGAGCu -3'
miRNA:   3'- aCGACauGUUCUG-GGC--------CAGCGgCUCG- -5'
23164 3' -56.1 NC_005178.1 + 35958 0.67 0.473175
Target:  5'- aGCUcggGCGGGACUCGaccaggCGUCGAGCa -3'
miRNA:   3'- aCGAca-UGUUCUGGGCca----GCGGCUCG- -5'
23164 3' -56.1 NC_005178.1 + 36209 0.74 0.197552
Target:  5'- aGCUGguagGCGGGAUggCCGacgCGCCGAGCg -3'
miRNA:   3'- aCGACa---UGUUCUG--GGCca-GCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.