Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23166 | 5' | -60.9 | NC_005178.1 | + | 25181 | 0.69 | 0.217506 |
Target: 5'- aGGCCGCCG-GUa-GUGGCCUGGGCg- -3' miRNA: 3'- -CUGGCGGCgCGggCAUCGGACUUGgg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 25335 | 0.7 | 0.177925 |
Target: 5'- uGGCCaggcgcuggaaaagaGCCGCGCUgGUGuCCUGGACCg -3' miRNA: 3'- -CUGG---------------CGGCGCGGgCAUcGGACUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 26191 | 0.67 | 0.267061 |
Target: 5'- uGGCCGCUGCGggCGUGGCgCUG-GCUCu -3' miRNA: 3'- -CUGGCGGCGCggGCAUCG-GACuUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 27723 | 0.67 | 0.280797 |
Target: 5'- cGACCGauuCGCGCagcagcGCCUGGACCUg -3' miRNA: 3'- -CUGGCg--GCGCGggcau-CGGACUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 28246 | 0.68 | 0.260399 |
Target: 5'- aGGCCGCUGcCGCCuCGcUGGCCgccGCCa -3' miRNA: 3'- -CUGGCGGC-GCGG-GC-AUCGGacuUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 28558 | 0.66 | 0.333272 |
Target: 5'- -uCCGCCGCGCCaccgggggCGUcGCCggcauuCCCg -3' miRNA: 3'- cuGGCGGCGCGG--------GCAuCGGacuu--GGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 28784 | 0.67 | 0.295089 |
Target: 5'- aGACCGCCGCccGCaCGcUGGCCaagucGCCCa -3' miRNA: 3'- -CUGGCGGCG--CGgGC-AUCGGacu--UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 28963 | 0.71 | 0.149693 |
Target: 5'- cGugCGCCaggugacccugcGCGCCCcUGGCCUGGGCg- -3' miRNA: 3'- -CugGCGG------------CGCGGGcAUCGGACUUGgg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 30480 | 0.66 | 0.341331 |
Target: 5'- cACCGCCuCGCCCagGGCCgGGcACUCa -3' miRNA: 3'- cUGGCGGcGCGGGcaUCGGaCU-UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 30991 | 0.66 | 0.333272 |
Target: 5'- gGAUCGCUGCGCaCGgaggcaagGGCCUGcuCCa -3' miRNA: 3'- -CUGGCGGCGCGgGCa-------UCGGACuuGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 31125 | 0.66 | 0.357866 |
Target: 5'- cGACgGCC-CGCCCGUGGUCaaugcacGGAUCg -3' miRNA: 3'- -CUGgCGGcGCGGGCAUCGGa------CUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 31586 | 0.73 | 0.104547 |
Target: 5'- uGACCGCCGCcgGCCUGga-CCUGGuccGCCCc -3' miRNA: 3'- -CUGGCGGCG--CGGGCaucGGACU---UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 31802 | 0.66 | 0.349529 |
Target: 5'- cACgGUCGUGCCCGaGGCCgccACCg -3' miRNA: 3'- cUGgCGGCGCGGGCaUCGGacuUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 33901 | 0.67 | 0.303188 |
Target: 5'- -cCUGCCGCGCCUGgcggcgaugcucggcGGCC-GGugCCg -3' miRNA: 3'- cuGGCGGCGCGGGCa--------------UCGGaCUugGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 33992 | 0.71 | 0.144085 |
Target: 5'- cGACCGCCucgucGCGCaucaugugguugaCGUAGCCcGAGCCg -3' miRNA: 3'- -CUGGCGG-----CGCGg------------GCAUCGGaCUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 34662 | 1.11 | 0.000131 |
Target: 5'- cGACCGCCGCGCCCGUAGCCUGAACCCu -3' miRNA: 3'- -CUGGCGGCGCGGGCAUCGGACUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 37177 | 0.68 | 0.253873 |
Target: 5'- cGAcCCGCUGCGCCUGgaggccgAGUUUGAcGCCa -3' miRNA: 3'- -CU-GGCGGCGCGGGCa------UCGGACU-UGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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