miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 12660 0.73 0.101662
Target:  5'- cGGCCGgCGCGCUggcggGUGGCCUGGuuGCCUg -3'
miRNA:   3'- -CUGGCgGCGCGGg----CAUCGGACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 14089 0.67 0.287873
Target:  5'- gGGCCGgcuUCGCGCCgGgcGCcCUGGccgucGCCCu -3'
miRNA:   3'- -CUGGC---GGCGCGGgCauCG-GACU-----UGGG- -5'
23166 5' -60.9 NC_005178.1 + 14662 0.74 0.090859
Target:  5'- cGAUCuCCGCGUCCGcaucggcgaUAGCCUGGGCCa -3'
miRNA:   3'- -CUGGcGGCGCGGGC---------AUCGGACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 15719 0.66 0.357866
Target:  5'- aGCCGCCGCGCaac--GCCUcGGCCg -3'
miRNA:   3'- cUGGCGGCGCGggcauCGGAcUUGGg -5'
23166 5' -60.9 NC_005178.1 + 16520 0.71 0.158048
Target:  5'- cGCaCGCCGCGCCCcccGCCUGGucuucgACCUc -3'
miRNA:   3'- cUG-GCGGCGCGGGcauCGGACU------UGGG- -5'
23166 5' -60.9 NC_005178.1 + 17606 0.72 0.119162
Target:  5'- cGGCCGCUGUGCgucgCCGUGGUCUGAcggucgaguccagcGCCg -3'
miRNA:   3'- -CUGGCGGCGCG----GGCAUCGGACU--------------UGGg -5'
23166 5' -60.9 NC_005178.1 + 18094 0.66 0.333272
Target:  5'- uGCCGCaGCGCCU--GGCCc-AGCCCg -3'
miRNA:   3'- cUGGCGgCGCGGGcaUCGGacUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 18138 0.67 0.267061
Target:  5'- aGGCCgagcagcucgGCUGCGCgCCGUuGgCUGAugCCg -3'
miRNA:   3'- -CUGG----------CGGCGCG-GGCAuCgGACUugGG- -5'
23166 5' -60.9 NC_005178.1 + 18673 0.67 0.27386
Target:  5'- -cCCGgCGCGCCCGUA-CCU---CCCg -3'
miRNA:   3'- cuGGCgGCGCGGGCAUcGGAcuuGGG- -5'
23166 5' -60.9 NC_005178.1 + 18836 0.69 0.217506
Target:  5'- gGACCGCauCGCGUgCGcuUGGCUUGAGCUg -3'
miRNA:   3'- -CUGGCG--GCGCGgGC--AUCGGACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 18914 0.71 0.153819
Target:  5'- uACgGCCuCGCCC--AGCCUGAccGCCCa -3'
miRNA:   3'- cUGgCGGcGCGGGcaUCGGACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 19740 0.66 0.333272
Target:  5'- aACCGCCGCGCucgaCCGUcGCC---ACCa -3'
miRNA:   3'- cUGGCGGCGCG----GGCAuCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 20020 0.66 0.357866
Target:  5'- cGGCCaGcCCGCGCCCGcugccGGCCguuuCCUg -3'
miRNA:   3'- -CUGG-C-GGCGCGGGCa----UCGGacuuGGG- -5'
23166 5' -60.9 NC_005178.1 + 20254 0.67 0.287873
Target:  5'- aGCgGCCGCGaCCUuUGGCCUcuacAACCCc -3'
miRNA:   3'- cUGgCGGCGC-GGGcAUCGGAc---UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 20863 0.66 0.325354
Target:  5'- gGGCgaUGCCuGCGCC---GGCCUGAucGCCCa -3'
miRNA:   3'- -CUG--GCGG-CGCGGgcaUCGGACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 21188 0.67 0.271806
Target:  5'- --gCGCCGcCGCCCGacucgcUGGUCUGGcuggugagcgugccGCCCa -3'
miRNA:   3'- cugGCGGC-GCGGGC------AUCGGACU--------------UGGG- -5'
23166 5' -60.9 NC_005178.1 + 21197 0.66 0.349529
Target:  5'- aGACCGUCGcCGCCaCGgacGGCaCcGaAACCCg -3'
miRNA:   3'- -CUGGCGGC-GCGG-GCa--UCG-GaC-UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 23454 0.7 0.19069
Target:  5'- cGACgGCCaggGCGCCCGgcgcgaAGCCg--GCCCg -3'
miRNA:   3'- -CUGgCGG---CGCGGGCa-----UCGGacuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 24898 0.67 0.287873
Target:  5'- -cCCGCCaGCGCgCCGgccGCC-GAGCCg -3'
miRNA:   3'- cuGGCGG-CGCG-GGCau-CGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 24993 0.68 0.241224
Target:  5'- cGCCGCCugugGCGCCCGaUAGUagUGGcucaaGCCCu -3'
miRNA:   3'- cUGGCGG----CGCGGGC-AUCGg-ACU-----UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.