miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 1213 0.79 0.037387
Target:  5'- cGCCGCCGCGCUgGa--CCUGAGCCCu -3'
miRNA:   3'- cUGGCGGCGCGGgCaucGGACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 1947 0.67 0.295089
Target:  5'- aACCGuCCG-GCCCGUgAGCC-GAAUCUu -3'
miRNA:   3'- cUGGC-GGCgCGGGCA-UCGGaCUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 2487 0.66 0.356188
Target:  5'- aACUGCUGCGCUCGcccucgguaacGCCcUGAucGCCCg -3'
miRNA:   3'- cUGGCGGCGCGGGCau---------CGG-ACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 2685 0.67 0.295089
Target:  5'- uGAUCGCCcgagGCGUCCGgucgGGCg-GAAUCCa -3'
miRNA:   3'- -CUGGCGG----CGCGGGCa---UCGgaCUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 2992 0.66 0.333272
Target:  5'- uGGCUGCCgaGCGUgCGcAGCCUGGAgCg -3'
miRNA:   3'- -CUGGCGG--CGCGgGCaUCGGACUUgGg -5'
23166 5' -60.9 NC_005178.1 + 3894 0.72 0.13381
Target:  5'- cGGCCGCCGcCGCCacaugacccccaaCGaAGCCUGGGCgCu -3'
miRNA:   3'- -CUGGCGGC-GCGG-------------GCaUCGGACUUGgG- -5'
23166 5' -60.9 NC_005178.1 + 4811 0.77 0.057635
Target:  5'- cGCCGCCGCGCCuacuaCGUccaGGCCaaaagcgucUGGACCCg -3'
miRNA:   3'- cUGGCGGCGCGG-----GCA---UCGG---------ACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 6734 0.67 0.302444
Target:  5'- uGCCGCCauGCGCCg--AGCaCUGAuCCCc -3'
miRNA:   3'- cUGGCGG--CGCGGgcaUCG-GACUuGGG- -5'
23166 5' -60.9 NC_005178.1 + 7035 0.66 0.30994
Target:  5'- cGAgCGUCGUGUCC-UGGCCgcgcUGAGCCg -3'
miRNA:   3'- -CUgGCGGCGCGGGcAUCGG----ACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 8097 0.66 0.30994
Target:  5'- -uCUGCUGgGCCUcUGGCCUG-AUCCa -3'
miRNA:   3'- cuGGCGGCgCGGGcAUCGGACuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 8165 0.66 0.325354
Target:  5'- aGAUagcaGCUGCGCUCGUAGgggcugCUGAugCCc -3'
miRNA:   3'- -CUGg---CGGCGCGGGCAUCg-----GACUugGG- -5'
23166 5' -60.9 NC_005178.1 + 9521 0.69 0.211896
Target:  5'- aGACCGCCaGCGCCgCcUGGCgCggGAACgCCa -3'
miRNA:   3'- -CUGGCGG-CGCGG-GcAUCG-Ga-CUUG-GG- -5'
23166 5' -60.9 NC_005178.1 + 10255 0.68 0.229106
Target:  5'- cGCUGCUGCGCCUGgAGCUUcuGCUCg -3'
miRNA:   3'- cUGGCGGCGCGGGCaUCGGAcuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 10507 0.7 0.17603
Target:  5'- uGACgGgCaaacCGCCCGUAGCCUGcucagcgaucuAGCCCg -3'
miRNA:   3'- -CUGgCgGc---GCGGGCAUCGGAC-----------UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 10654 0.67 0.280797
Target:  5'- cGGCCGgcgucuCCGCGCCgacccUGUcucAGCCguUGAACCCc -3'
miRNA:   3'- -CUGGC------GGCGCGG-----GCA---UCGG--ACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 10786 0.71 0.158048
Target:  5'- cGCCGCCGCcaUCC-UGGCC-GAGCCCa -3'
miRNA:   3'- cUGGCGGCGc-GGGcAUCGGaCUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 11157 0.69 0.20587
Target:  5'- uGGCCGCCGCccugggcuuccugGuCCUGUGGCCccGAACUa -3'
miRNA:   3'- -CUGGCGGCG-------------C-GGGCAUCGGa-CUUGGg -5'
23166 5' -60.9 NC_005178.1 + 11383 0.69 0.210789
Target:  5'- cACCGCCGCGCCgaugaugauaaaGgcGCuaccugcuccgCUGAGCCCc -3'
miRNA:   3'- cUGGCGGCGCGGg-----------CauCG-----------GACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 11738 0.68 0.247482
Target:  5'- cGACaC-CCGCGCauaugccacggCCGUGGCCcGAGCCa -3'
miRNA:   3'- -CUG-GcGGCGCG-----------GGCAUCGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 12391 0.66 0.325354
Target:  5'- uGACCGCCaucaGCUCGcgGGCUUGcuggcGGCCCu -3'
miRNA:   3'- -CUGGCGGcg--CGGGCa-UCGGAC-----UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.