miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 10654 0.67 0.280797
Target:  5'- cGGCCGgcgucuCCGCGCCgacccUGUcucAGCCguUGAACCCc -3'
miRNA:   3'- -CUGGC------GGCGCGG-----GCA---UCGG--ACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 11157 0.69 0.20587
Target:  5'- uGGCCGCCGCccugggcuuccugGuCCUGUGGCCccGAACUa -3'
miRNA:   3'- -CUGGCGGCG-------------C-GGGCAUCGGa-CUUGGg -5'
23166 5' -60.9 NC_005178.1 + 9521 0.69 0.211896
Target:  5'- aGACCGCCaGCGCCgCcUGGCgCggGAACgCCa -3'
miRNA:   3'- -CUGGCGG-CGCGG-GcAUCG-Ga-CUUG-GG- -5'
23166 5' -60.9 NC_005178.1 + 24993 0.68 0.241224
Target:  5'- cGCCGCCugugGCGCCCGaUAGUagUGGcucaaGCCCu -3'
miRNA:   3'- cUGGCGG----CGCGGGC-AUCGg-ACU-----UGGG- -5'
23166 5' -60.9 NC_005178.1 + 11738 0.68 0.247482
Target:  5'- cGACaC-CCGCGCauaugccacggCCGUGGCCcGAGCCa -3'
miRNA:   3'- -CUG-GcGGCGCG-----------GGCAUCGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 37177 0.68 0.253873
Target:  5'- cGAcCCGCUGCGCCUGgaggccgAGUUUGAcGCCa -3'
miRNA:   3'- -CU-GGCGGCGCGGGCa------UCGGACU-UGGg -5'
23166 5' -60.9 NC_005178.1 + 28246 0.68 0.260399
Target:  5'- aGGCCGCUGcCGCCuCGcUGGCCgccGCCa -3'
miRNA:   3'- -CUGGCGGC-GCGG-GC-AUCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 26191 0.67 0.267061
Target:  5'- uGGCCGCUGCGggCGUGGCgCUG-GCUCu -3'
miRNA:   3'- -CUGGCGGCGCggGCAUCG-GACuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 18673 0.67 0.27386
Target:  5'- -cCCGgCGCGCCCGUA-CCU---CCCg -3'
miRNA:   3'- cuGGCgGCGCGGGCAUcGGAcuuGGG- -5'
23166 5' -60.9 NC_005178.1 + 23454 0.7 0.19069
Target:  5'- cGACgGCCaggGCGCCCGgcgcgaAGCCg--GCCCg -3'
miRNA:   3'- -CUGgCGG---CGCGGGCa-----UCGGacuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 10507 0.7 0.17603
Target:  5'- uGACgGgCaaacCGCCCGUAGCCUGcucagcgaucuAGCCCg -3'
miRNA:   3'- -CUGgCgGc---GCGGGCAUCGGAC-----------UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 16520 0.71 0.158048
Target:  5'- cGCaCGCCGCGCCCcccGCCUGGucuucgACCUc -3'
miRNA:   3'- cUG-GCGGCGCGGGcauCGGACU------UGGG- -5'
23166 5' -60.9 NC_005178.1 + 1213 0.79 0.037387
Target:  5'- cGCCGCCGCGCUgGa--CCUGAGCCCu -3'
miRNA:   3'- cUGGCGGCGCGGgCaucGGACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 4811 0.77 0.057635
Target:  5'- cGCCGCCGCGCCuacuaCGUccaGGCCaaaagcgucUGGACCCg -3'
miRNA:   3'- cUGGCGGCGCGG-----GCA---UCGG---------ACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 12660 0.73 0.101662
Target:  5'- cGGCCGgCGCGCUggcggGUGGCCUGGuuGCCUg -3'
miRNA:   3'- -CUGGCgGCGCGGg----CAUCGGACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 31586 0.73 0.104547
Target:  5'- uGACCGCCGCcgGCCUGga-CCUGGuccGCCCc -3'
miRNA:   3'- -CUGGCGGCG--CGGGCaucGGACU---UGGG- -5'
23166 5' -60.9 NC_005178.1 + 17606 0.72 0.119162
Target:  5'- cGGCCGCUGUGCgucgCCGUGGUCUGAcggucgaguccagcGCCg -3'
miRNA:   3'- -CUGGCGGCGCG----GGCAUCGGACU--------------UGGg -5'
23166 5' -60.9 NC_005178.1 + 3894 0.72 0.13381
Target:  5'- cGGCCGCCGcCGCCacaugacccccaaCGaAGCCUGGGCgCu -3'
miRNA:   3'- -CUGGCGGC-GCGG-------------GCaUCGGACUUGgG- -5'
23166 5' -60.9 NC_005178.1 + 28963 0.71 0.149693
Target:  5'- cGugCGCCaggugacccugcGCGCCCcUGGCCUGGGCg- -3'
miRNA:   3'- -CugGCGG------------CGCGGGcAUCGGACUUGgg -5'
23166 5' -60.9 NC_005178.1 + 10786 0.71 0.158048
Target:  5'- cGCCGCCGCcaUCC-UGGCC-GAGCCCa -3'
miRNA:   3'- cUGGCGGCGc-GGGcAUCGGaCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.