Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23166 | 5' | -60.9 | NC_005178.1 | + | 34662 | 1.11 | 0.000131 |
Target: 5'- cGACCGCCGCGCCCGUAGCCUGAACCCu -3' miRNA: 3'- -CUGGCGGCGCGGGCAUCGGACUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 1213 | 0.79 | 0.037387 |
Target: 5'- cGCCGCCGCGCUgGa--CCUGAGCCCu -3' miRNA: 3'- cUGGCGGCGCGGgCaucGGACUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 4811 | 0.77 | 0.057635 |
Target: 5'- cGCCGCCGCGCCuacuaCGUccaGGCCaaaagcgucUGGACCCg -3' miRNA: 3'- cUGGCGGCGCGG-----GCA---UCGG---------ACUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 14662 | 0.74 | 0.090859 |
Target: 5'- cGAUCuCCGCGUCCGcaucggcgaUAGCCUGGGCCa -3' miRNA: 3'- -CUGGcGGCGCGGGC---------AUCGGACUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 12660 | 0.73 | 0.101662 |
Target: 5'- cGGCCGgCGCGCUggcggGUGGCCUGGuuGCCUg -3' miRNA: 3'- -CUGGCgGCGCGGg----CAUCGGACU--UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 31586 | 0.73 | 0.104547 |
Target: 5'- uGACCGCCGCcgGCCUGga-CCUGGuccGCCCc -3' miRNA: 3'- -CUGGCGGCG--CGGGCaucGGACU---UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 17606 | 0.72 | 0.119162 |
Target: 5'- cGGCCGCUGUGCgucgCCGUGGUCUGAcggucgaguccagcGCCg -3' miRNA: 3'- -CUGGCGGCGCG----GGCAUCGGACU--------------UGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 3894 | 0.72 | 0.13381 |
Target: 5'- cGGCCGCCGcCGCCacaugacccccaaCGaAGCCUGGGCgCu -3' miRNA: 3'- -CUGGCGGC-GCGG-------------GCaUCGGACUUGgG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 33992 | 0.71 | 0.144085 |
Target: 5'- cGACCGCCucgucGCGCaucaugugguugaCGUAGCCcGAGCCg -3' miRNA: 3'- -CUGGCGG-----CGCGg------------GCAUCGGaCUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 28963 | 0.71 | 0.149693 |
Target: 5'- cGugCGCCaggugacccugcGCGCCCcUGGCCUGGGCg- -3' miRNA: 3'- -CugGCGG------------CGCGGGcAUCGGACUUGgg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 18914 | 0.71 | 0.153819 |
Target: 5'- uACgGCCuCGCCC--AGCCUGAccGCCCa -3' miRNA: 3'- cUGgCGGcGCGGGcaUCGGACU--UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 10786 | 0.71 | 0.158048 |
Target: 5'- cGCCGCCGCcaUCC-UGGCC-GAGCCCa -3' miRNA: 3'- cUGGCGGCGc-GGGcAUCGGaCUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 16520 | 0.71 | 0.158048 |
Target: 5'- cGCaCGCCGCGCCCcccGCCUGGucuucgACCUc -3' miRNA: 3'- cUG-GCGGCGCGGGcauCGGACU------UGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 10507 | 0.7 | 0.17603 |
Target: 5'- uGACgGgCaaacCGCCCGUAGCCUGcucagcgaucuAGCCCg -3' miRNA: 3'- -CUGgCgGc---GCGGGCAUCGGAC-----------UUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 25335 | 0.7 | 0.177925 |
Target: 5'- uGGCCaggcgcuggaaaagaGCCGCGCUgGUGuCCUGGACCg -3' miRNA: 3'- -CUGG---------------CGGCGCGGgCAUcGGACUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 23454 | 0.7 | 0.19069 |
Target: 5'- cGACgGCCaggGCGCCCGgcgcgaAGCCg--GCCCg -3' miRNA: 3'- -CUGgCGG---CGCGGGCa-----UCGGacuUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 11157 | 0.69 | 0.20587 |
Target: 5'- uGGCCGCCGCccugggcuuccugGuCCUGUGGCCccGAACUa -3' miRNA: 3'- -CUGGCGGCG-------------C-GGGCAUCGGa-CUUGGg -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 11383 | 0.69 | 0.210789 |
Target: 5'- cACCGCCGCGCCgaugaugauaaaGgcGCuaccugcuccgCUGAGCCCc -3' miRNA: 3'- cUGGCGGCGCGGg-----------CauCG-----------GACUUGGG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 9521 | 0.69 | 0.211896 |
Target: 5'- aGACCGCCaGCGCCgCcUGGCgCggGAACgCCa -3' miRNA: 3'- -CUGGCGG-CGCGG-GcAUCG-Ga-CUUG-GG- -5' |
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23166 | 5' | -60.9 | NC_005178.1 | + | 25181 | 0.69 | 0.217506 |
Target: 5'- aGGCCGCCG-GUa-GUGGCCUGGGCg- -3' miRNA: 3'- -CUGGCGGCgCGggCAUCGGACUUGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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