miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 14662 0.74 0.090859
Target:  5'- cGAUCuCCGCGUCCGcaucggcgaUAGCCUGGGCCa -3'
miRNA:   3'- -CUGGcGGCGCGGGC---------AUCGGACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 20863 0.66 0.325354
Target:  5'- gGGCgaUGCCuGCGCC---GGCCUGAucGCCCa -3'
miRNA:   3'- -CUG--GCGG-CGCGGgcaUCGGACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 30991 0.66 0.333272
Target:  5'- gGAUCGCUGCGCaCGgaggcaagGGCCUGcuCCa -3'
miRNA:   3'- -CUGGCGGCGCGgGCa-------UCGGACuuGGg -5'
23166 5' -60.9 NC_005178.1 + 31802 0.66 0.349529
Target:  5'- cACgGUCGUGCCCGaGGCCgccACCg -3'
miRNA:   3'- cUGgCGGCGCGGGCaUCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 11383 0.69 0.210789
Target:  5'- cACCGCCGCGCCgaugaugauaaaGgcGCuaccugcuccgCUGAGCCCc -3'
miRNA:   3'- cUGGCGGCGCGGg-----------CauCG-----------GACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 25181 0.69 0.217506
Target:  5'- aGGCCGCCG-GUa-GUGGCCUGGGCg- -3'
miRNA:   3'- -CUGGCGGCgCGggCAUCGGACUUGgg -5'
23166 5' -60.9 NC_005178.1 + 10255 0.68 0.229106
Target:  5'- cGCUGCUGCGCCUGgAGCUUcuGCUCg -3'
miRNA:   3'- cUGGCGGCGCGGGCaUCGGAcuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 18138 0.67 0.267061
Target:  5'- aGGCCgagcagcucgGCUGCGCgCCGUuGgCUGAugCCg -3'
miRNA:   3'- -CUGG----------CGGCGCG-GGCAuCgGACUugGG- -5'
23166 5' -60.9 NC_005178.1 + 24898 0.67 0.287873
Target:  5'- -cCCGCCaGCGCgCCGgccGCC-GAGCCg -3'
miRNA:   3'- cuGGCGG-CGCG-GGCau-CGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 2685 0.67 0.295089
Target:  5'- uGAUCGCCcgagGCGUCCGgucgGGCg-GAAUCCa -3'
miRNA:   3'- -CUGGCGG----CGCGGGCa---UCGgaCUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 14089 0.67 0.287873
Target:  5'- gGGCCGgcuUCGCGCCgGgcGCcCUGGccgucGCCCu -3'
miRNA:   3'- -CUGGC---GGCGCGGgCauCG-GACU-----UGGG- -5'
23166 5' -60.9 NC_005178.1 + 33992 0.71 0.144085
Target:  5'- cGACCGCCucgucGCGCaucaugugguugaCGUAGCCcGAGCCg -3'
miRNA:   3'- -CUGGCGG-----CGCGg------------GCAUCGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 8165 0.66 0.325354
Target:  5'- aGAUagcaGCUGCGCUCGUAGgggcugCUGAugCCc -3'
miRNA:   3'- -CUGg---CGGCGCGGGCAUCg-----GACUugGG- -5'
23166 5' -60.9 NC_005178.1 + 18914 0.71 0.153819
Target:  5'- uACgGCCuCGCCC--AGCCUGAccGCCCa -3'
miRNA:   3'- cUGgCGGcGCGGGcaUCGGACU--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 21188 0.67 0.271806
Target:  5'- --gCGCCGcCGCCCGacucgcUGGUCUGGcuggugagcgugccGCCCa -3'
miRNA:   3'- cugGCGGC-GCGGGC------AUCGGACU--------------UGGG- -5'
23166 5' -60.9 NC_005178.1 + 12391 0.66 0.325354
Target:  5'- uGACCGCCaucaGCUCGcgGGCUUGcuggcGGCCCu -3'
miRNA:   3'- -CUGGCGGcg--CGGGCa-UCGGAC-----UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 30480 0.66 0.341331
Target:  5'- cACCGCCuCGCCCagGGCCgGGcACUCa -3'
miRNA:   3'- cUGGCGGcGCGGGcaUCGGaCU-UGGG- -5'
23166 5' -60.9 NC_005178.1 + 25335 0.7 0.177925
Target:  5'- uGGCCaggcgcuggaaaagaGCCGCGCUgGUGuCCUGGACCg -3'
miRNA:   3'- -CUGG---------------CGGCGCGGgCAUcGGACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 18836 0.69 0.217506
Target:  5'- gGACCGCauCGCGUgCGcuUGGCUUGAGCUg -3'
miRNA:   3'- -CUGGCG--GCGCGgGC--AUCGGACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 28784 0.67 0.295089
Target:  5'- aGACCGCCGCccGCaCGcUGGCCaagucGCCCa -3'
miRNA:   3'- -CUGGCGGCG--CGgGC-AUCGGacu--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.