miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 37177 0.68 0.253873
Target:  5'- cGAcCCGCUGCGCCUGgaggccgAGUUUGAcGCCa -3'
miRNA:   3'- -CU-GGCGGCGCGGGCa------UCGGACU-UGGg -5'
23166 5' -60.9 NC_005178.1 + 34662 1.11 0.000131
Target:  5'- cGACCGCCGCGCCCGUAGCCUGAACCCu -3'
miRNA:   3'- -CUGGCGGCGCGGGCAUCGGACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 33992 0.71 0.144085
Target:  5'- cGACCGCCucgucGCGCaucaugugguugaCGUAGCCcGAGCCg -3'
miRNA:   3'- -CUGGCGG-----CGCGg------------GCAUCGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 33901 0.67 0.303188
Target:  5'- -cCUGCCGCGCCUGgcggcgaugcucggcGGCC-GGugCCg -3'
miRNA:   3'- cuGGCGGCGCGGGCa--------------UCGGaCUugGG- -5'
23166 5' -60.9 NC_005178.1 + 31802 0.66 0.349529
Target:  5'- cACgGUCGUGCCCGaGGCCgccACCg -3'
miRNA:   3'- cUGgCGGCGCGGGCaUCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 31586 0.73 0.104547
Target:  5'- uGACCGCCGCcgGCCUGga-CCUGGuccGCCCc -3'
miRNA:   3'- -CUGGCGGCG--CGGGCaucGGACU---UGGG- -5'
23166 5' -60.9 NC_005178.1 + 31125 0.66 0.357866
Target:  5'- cGACgGCC-CGCCCGUGGUCaaugcacGGAUCg -3'
miRNA:   3'- -CUGgCGGcGCGGGCAUCGGa------CUUGGg -5'
23166 5' -60.9 NC_005178.1 + 30991 0.66 0.333272
Target:  5'- gGAUCGCUGCGCaCGgaggcaagGGCCUGcuCCa -3'
miRNA:   3'- -CUGGCGGCGCGgGCa-------UCGGACuuGGg -5'
23166 5' -60.9 NC_005178.1 + 30480 0.66 0.341331
Target:  5'- cACCGCCuCGCCCagGGCCgGGcACUCa -3'
miRNA:   3'- cUGGCGGcGCGGGcaUCGGaCU-UGGG- -5'
23166 5' -60.9 NC_005178.1 + 28963 0.71 0.149693
Target:  5'- cGugCGCCaggugacccugcGCGCCCcUGGCCUGGGCg- -3'
miRNA:   3'- -CugGCGG------------CGCGGGcAUCGGACUUGgg -5'
23166 5' -60.9 NC_005178.1 + 28784 0.67 0.295089
Target:  5'- aGACCGCCGCccGCaCGcUGGCCaagucGCCCa -3'
miRNA:   3'- -CUGGCGGCG--CGgGC-AUCGGacu--UGGG- -5'
23166 5' -60.9 NC_005178.1 + 28558 0.66 0.333272
Target:  5'- -uCCGCCGCGCCaccgggggCGUcGCCggcauuCCCg -3'
miRNA:   3'- cuGGCGGCGCGG--------GCAuCGGacuu--GGG- -5'
23166 5' -60.9 NC_005178.1 + 28246 0.68 0.260399
Target:  5'- aGGCCGCUGcCGCCuCGcUGGCCgccGCCa -3'
miRNA:   3'- -CUGGCGGC-GCGG-GC-AUCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 27723 0.67 0.280797
Target:  5'- cGACCGauuCGCGCagcagcGCCUGGACCUg -3'
miRNA:   3'- -CUGGCg--GCGCGggcau-CGGACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 26191 0.67 0.267061
Target:  5'- uGGCCGCUGCGggCGUGGCgCUG-GCUCu -3'
miRNA:   3'- -CUGGCGGCGCggGCAUCG-GACuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 25335 0.7 0.177925
Target:  5'- uGGCCaggcgcuggaaaagaGCCGCGCUgGUGuCCUGGACCg -3'
miRNA:   3'- -CUGG---------------CGGCGCGGgCAUcGGACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 25181 0.69 0.217506
Target:  5'- aGGCCGCCG-GUa-GUGGCCUGGGCg- -3'
miRNA:   3'- -CUGGCGGCgCGggCAUCGGACUUGgg -5'
23166 5' -60.9 NC_005178.1 + 24993 0.68 0.241224
Target:  5'- cGCCGCCugugGCGCCCGaUAGUagUGGcucaaGCCCu -3'
miRNA:   3'- cUGGCGG----CGCGGGC-AUCGg-ACU-----UGGG- -5'
23166 5' -60.9 NC_005178.1 + 24898 0.67 0.287873
Target:  5'- -cCCGCCaGCGCgCCGgccGCC-GAGCCg -3'
miRNA:   3'- cuGGCGG-CGCG-GGCau-CGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 23454 0.7 0.19069
Target:  5'- cGACgGCCaggGCGCCCGgcgcgaAGCCg--GCCCg -3'
miRNA:   3'- -CUGgCGG---CGCGGGCa-----UCGGacuUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.