miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23166 5' -60.9 NC_005178.1 + 2685 0.67 0.295089
Target:  5'- uGAUCGCCcgagGCGUCCGgucgGGCg-GAAUCCa -3'
miRNA:   3'- -CUGGCGG----CGCGGGCa---UCGgaCUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 1947 0.67 0.295089
Target:  5'- aACCGuCCG-GCCCGUgAGCC-GAAUCUu -3'
miRNA:   3'- cUGGC-GGCgCGGGCA-UCGGaCUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 20254 0.67 0.287873
Target:  5'- aGCgGCCGCGaCCUuUGGCCUcuacAACCCc -3'
miRNA:   3'- cUGgCGGCGC-GGGcAUCGGAc---UUGGG- -5'
23166 5' -60.9 NC_005178.1 + 14089 0.67 0.287873
Target:  5'- gGGCCGgcuUCGCGCCgGgcGCcCUGGccgucGCCCu -3'
miRNA:   3'- -CUGGC---GGCGCGGgCauCG-GACU-----UGGG- -5'
23166 5' -60.9 NC_005178.1 + 24898 0.67 0.287873
Target:  5'- -cCCGCCaGCGCgCCGgccGCC-GAGCCg -3'
miRNA:   3'- cuGGCGG-CGCG-GGCau-CGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 27723 0.67 0.280797
Target:  5'- cGACCGauuCGCGCagcagcGCCUGGACCUg -3'
miRNA:   3'- -CUGGCg--GCGCGggcau-CGGACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 10654 0.67 0.280797
Target:  5'- cGGCCGgcgucuCCGCGCCgacccUGUcucAGCCguUGAACCCc -3'
miRNA:   3'- -CUGGC------GGCGCGG-----GCA---UCGG--ACUUGGG- -5'
23166 5' -60.9 NC_005178.1 + 18673 0.67 0.27386
Target:  5'- -cCCGgCGCGCCCGUA-CCU---CCCg -3'
miRNA:   3'- cuGGCgGCGCGGGCAUcGGAcuuGGG- -5'
23166 5' -60.9 NC_005178.1 + 21188 0.67 0.271806
Target:  5'- --gCGCCGcCGCCCGacucgcUGGUCUGGcuggugagcgugccGCCCa -3'
miRNA:   3'- cugGCGGC-GCGGGC------AUCGGACU--------------UGGG- -5'
23166 5' -60.9 NC_005178.1 + 18138 0.67 0.267061
Target:  5'- aGGCCgagcagcucgGCUGCGCgCCGUuGgCUGAugCCg -3'
miRNA:   3'- -CUGG----------CGGCGCG-GGCAuCgGACUugGG- -5'
23166 5' -60.9 NC_005178.1 + 26191 0.67 0.267061
Target:  5'- uGGCCGCUGCGggCGUGGCgCUG-GCUCu -3'
miRNA:   3'- -CUGGCGGCGCggGCAUCG-GACuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 28246 0.68 0.260399
Target:  5'- aGGCCGCUGcCGCCuCGcUGGCCgccGCCa -3'
miRNA:   3'- -CUGGCGGC-GCGG-GC-AUCGGacuUGGg -5'
23166 5' -60.9 NC_005178.1 + 37177 0.68 0.253873
Target:  5'- cGAcCCGCUGCGCCUGgaggccgAGUUUGAcGCCa -3'
miRNA:   3'- -CU-GGCGGCGCGGGCa------UCGGACU-UGGg -5'
23166 5' -60.9 NC_005178.1 + 11738 0.68 0.247482
Target:  5'- cGACaC-CCGCGCauaugccacggCCGUGGCCcGAGCCa -3'
miRNA:   3'- -CUG-GcGGCGCG-----------GGCAUCGGaCUUGGg -5'
23166 5' -60.9 NC_005178.1 + 24993 0.68 0.241224
Target:  5'- cGCCGCCugugGCGCCCGaUAGUagUGGcucaaGCCCu -3'
miRNA:   3'- cUGGCGG----CGCGGGC-AUCGg-ACU-----UGGG- -5'
23166 5' -60.9 NC_005178.1 + 10255 0.68 0.229106
Target:  5'- cGCUGCUGCGCCUGgAGCUUcuGCUCg -3'
miRNA:   3'- cUGGCGGCGCGGGCaUCGGAcuUGGG- -5'
23166 5' -60.9 NC_005178.1 + 18836 0.69 0.217506
Target:  5'- gGACCGCauCGCGUgCGcuUGGCUUGAGCUg -3'
miRNA:   3'- -CUGGCG--GCGCGgGC--AUCGGACUUGGg -5'
23166 5' -60.9 NC_005178.1 + 25181 0.69 0.217506
Target:  5'- aGGCCGCCG-GUa-GUGGCCUGGGCg- -3'
miRNA:   3'- -CUGGCGGCgCGggCAUCGGACUUGgg -5'
23166 5' -60.9 NC_005178.1 + 9521 0.69 0.211896
Target:  5'- aGACCGCCaGCGCCgCcUGGCgCggGAACgCCa -3'
miRNA:   3'- -CUGGCGG-CGCGG-GcAUCG-Ga-CUUG-GG- -5'
23166 5' -60.9 NC_005178.1 + 11383 0.69 0.210789
Target:  5'- cACCGCCGCGCCgaugaugauaaaGgcGCuaccugcuccgCUGAGCCCc -3'
miRNA:   3'- cUGGCGGCGCGGg-----------CauCG-----------GACUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.