miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23167 3' -56.2 NC_005178.1 + 18275 0.66 0.565434
Target:  5'- cGGGcUCGCCCUgGGCCGUUa--CAGGAg -3'
miRNA:   3'- -UUCuAGUGGGA-CUGGCAGcagGUCCU- -5'
23167 3' -56.2 NC_005178.1 + 8152 0.66 0.543313
Target:  5'- cGAGAUCGCCCguggggacGACCagGUCGUUCGcGAa -3'
miRNA:   3'- -UUCUAGUGGGa-------CUGG--CAGCAGGUcCU- -5'
23167 3' -56.2 NC_005178.1 + 5688 0.66 0.532358
Target:  5'- gGGGaAUCGCgCUG-CCGUUGUCCAagguGGAc -3'
miRNA:   3'- -UUC-UAGUGgGACuGGCAGCAGGU----CCU- -5'
23167 3' -56.2 NC_005178.1 + 26679 0.66 0.525823
Target:  5'- -uGggCACCCUggaaaccgcuuggaaGACCGUUG-CCGGGGu -3'
miRNA:   3'- uuCuaGUGGGA---------------CUGGCAGCaGGUCCU- -5'
23167 3' -56.2 NC_005178.1 + 17838 0.67 0.500004
Target:  5'- cGAGcgCACCCUGggagcgccuGCCGcCcucggcgagGUCCAGGAc -3'
miRNA:   3'- -UUCuaGUGGGAC---------UGGCaG---------CAGGUCCU- -5'
23167 3' -56.2 NC_005178.1 + 34722 0.67 0.489411
Target:  5'- -cGG-CAuCCCUGAaaCCGUCGUUCGGGu -3'
miRNA:   3'- uuCUaGU-GGGACU--GGCAGCAGGUCCu -5'
23167 3' -56.2 NC_005178.1 + 15889 0.7 0.326412
Target:  5'- gAAGG-CGCCgUUGACCGcuucauagaccagcUCGUCCGGGAg -3'
miRNA:   3'- -UUCUaGUGG-GACUGGC--------------AGCAGGUCCU- -5'
23167 3' -56.2 NC_005178.1 + 11148 0.7 0.320727
Target:  5'- -cGggCGCCCUGGCCGcCGcCCuGGGc -3'
miRNA:   3'- uuCuaGUGGGACUGGCaGCaGGuCCU- -5'
23167 3' -56.2 NC_005178.1 + 14104 0.77 0.100996
Target:  5'- -cGggCGCCCUGGCCGUCGcCCuGGGc -3'
miRNA:   3'- uuCuaGUGGGACUGGCAGCaGGuCCU- -5'
23167 3' -56.2 NC_005178.1 + 34782 1.06 0.000735
Target:  5'- cAAGAUCACCCUGACCGUCGUCCAGGAu -3'
miRNA:   3'- -UUCUAGUGGGACUGGCAGCAGGUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.