Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23168 | 3' | -56 | NC_005178.1 | + | 2506 | 0.66 | 0.537499 |
Target: 5'- -aUCAACgaacGCGCCAgagcugccgacGCGGU-CGGUCAg -3' miRNA: 3'- ucAGUUGa---UGCGGU-----------CGCCGuGCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 3221 | 0.71 | 0.300392 |
Target: 5'- aGGUCGGCaACGUCAGCcGCGaGGUCGg -3' miRNA: 3'- -UCAGUUGaUGCGGUCGcCGUgCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 5871 | 0.69 | 0.357968 |
Target: 5'- cGGUCAGCcGgGUCAGCguaGGCuguuCGGUCAg -3' miRNA: 3'- -UCAGUUGaUgCGGUCG---CCGu---GCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 8761 | 0.76 | 0.140068 |
Target: 5'- gGG-CGACUugGCCAGCGuGCgggcgGCGGUCu -3' miRNA: 3'- -UCaGUUGAugCGGUCGC-CG-----UGCCAGu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 8988 | 0.66 | 0.559595 |
Target: 5'- uGcCGGCgACGCCcccGGUGGCGCGG-CGg -3' miRNA: 3'- uCaGUUGaUGCGG---UCGCCGUGCCaGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 9701 | 0.69 | 0.366799 |
Target: 5'- aGGUCGGCguaguUGCGUugCAGCuGCugGGUCAu -3' miRNA: 3'- -UCAGUUG-----AUGCG--GUCGcCGugCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 12191 | 0.66 | 0.537499 |
Target: 5'- cGGaCAGCUcccgGCCAGCcuggcuGGCAUGGUCGc -3' miRNA: 3'- -UCaGUUGAug--CGGUCG------CCGUGCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 12718 | 0.67 | 0.494287 |
Target: 5'- cGUCAGC-ACGuCCAGCGcaAUGGUCGc -3' miRNA: 3'- uCAGUUGaUGC-GGUCGCcgUGCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 13547 | 0.68 | 0.413151 |
Target: 5'- --cCAGCU-CGCCuauGCGGCG-GGUCAg -3' miRNA: 3'- ucaGUUGAuGCGGu--CGCCGUgCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 14614 | 0.67 | 0.483729 |
Target: 5'- cAGgCAcCUGgGCCAGCGGCAgcUGGUa- -3' miRNA: 3'- -UCaGUuGAUgCGGUCGCCGU--GCCAgu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 17305 | 0.67 | 0.472241 |
Target: 5'- cGUCAGauaguggUUGCGCCGGaCGGCGgGGcCGa -3' miRNA: 3'- uCAGUU-------GAUGCGGUC-GCCGUgCCaGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 19942 | 0.72 | 0.237235 |
Target: 5'- cGUCAgaccACggcgACGCCAGCGGcCGCcGUCAa -3' miRNA: 3'- uCAGU----UGa---UGCGGUCGCC-GUGcCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 20159 | 0.82 | 0.045776 |
Target: 5'- -uUCAGCUACGCCccGGaCGGCACGGUCc -3' miRNA: 3'- ucAGUUGAUGCGG--UC-GCCGUGCCAGu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 25913 | 0.66 | 0.51571 |
Target: 5'- cAG-CAGCUuuGCCAG-GGCGCGGa-- -3' miRNA: 3'- -UCaGUUGAugCGGUCgCCGUGCCagu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 28019 | 0.7 | 0.340758 |
Target: 5'- cGUUGGCguucccGCGCCAgGCGGCgcugGCGGUCu -3' miRNA: 3'- uCAGUUGa-----UGCGGU-CGCCG----UGCCAGu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 28531 | 0.66 | 0.57074 |
Target: 5'- aGGUCGAa---GCCGGCaacGGCGCGGagUCGg -3' miRNA: 3'- -UCAGUUgaugCGGUCG---CCGUGCC--AGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 29058 | 0.66 | 0.548512 |
Target: 5'- --aCAACcuuCGCCugaugGGCGGCACGGcguUCAa -3' miRNA: 3'- ucaGUUGau-GCGG-----UCGCCGUGCC---AGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 32560 | 0.66 | 0.548512 |
Target: 5'- -aUCAGCUcgACcugGCCAGCGGCGaccaggUGGUCc -3' miRNA: 3'- ucAGUUGA--UG---CGGUCGCCGU------GCCAGu -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 32898 | 0.66 | 0.526562 |
Target: 5'- cAG-CGGCUGgGugaucuCCAGCGGCGUGGUCGc -3' miRNA: 3'- -UCaGUUGAUgC------GGUCGCCGUGCCAGU- -5' |
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23168 | 3' | -56 | NC_005178.1 | + | 33660 | 0.71 | 0.285312 |
Target: 5'- gGGUCAugUgGCGgCGGCGGC-CGGUg- -3' miRNA: 3'- -UCAGUugA-UGCgGUCGCCGuGCCAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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