Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 34985 | 0.66 | 0.435688 |
Target: 5'- gGCC-GCGCUGGCCgaggCGCcgaCCAGCc- -3' miRNA: 3'- -UGGaUGCGGCCGGa---GUGua-GGUCGuc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 10737 | 0.66 | 0.425941 |
Target: 5'- aGCCc-CGCUGGCCacagCGCGUcCCGGCuGg -3' miRNA: 3'- -UGGauGCGGCCGGa---GUGUA-GGUCGuC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 23018 | 0.66 | 0.425941 |
Target: 5'- aACUUGCGCC-GCUUcCACAguggguuuUUCAGCAGg -3' miRNA: 3'- -UGGAUGCGGcCGGA-GUGU--------AGGUCGUC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 12974 | 0.66 | 0.416325 |
Target: 5'- cGCCcagguCGCCGGUauccggCUUGCugguGUCCAGCAGg -3' miRNA: 3'- -UGGau---GCGGCCG------GAGUG----UAGGUCGUC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 8311 | 0.66 | 0.406843 |
Target: 5'- aGCCgGCGCCGGCCgacucgUAgAUCguGCuGa -3' miRNA: 3'- -UGGaUGCGGCCGGa-----GUgUAGguCGuC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 5353 | 0.66 | 0.406843 |
Target: 5'- gGCCaaACGCuCGGUgUCgGCGUCCAGCu- -3' miRNA: 3'- -UGGa-UGCG-GCCGgAG-UGUAGGUCGuc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 2734 | 0.66 | 0.397497 |
Target: 5'- cGCC-ACGCCGGUUgu-CG-CCGGCAGa -3' miRNA: 3'- -UGGaUGCGGCCGGaguGUaGGUCGUC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 16719 | 0.67 | 0.379226 |
Target: 5'- aGCCgGCGCCcuGGuCCUCGCAUcgcugcgcuggcCCAGguGa -3' miRNA: 3'- -UGGaUGCGG--CC-GGAGUGUA------------GGUCguC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 2149 | 0.67 | 0.379226 |
Target: 5'- gGCCaGCGCCGGggccaguuggcCCUCGCugguguucgUCAGCAGc -3' miRNA: 3'- -UGGaUGCGGCC-----------GGAGUGua-------GGUCGUC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 31422 | 0.67 | 0.370303 |
Target: 5'- gGCgCUGCcgauCUGGCCUgAUAUCCAGCu- -3' miRNA: 3'- -UG-GAUGc---GGCCGGAgUGUAGGUCGuc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 20751 | 0.67 | 0.361526 |
Target: 5'- uCCUGgGCCGGCaggCugG-CCAGCAc -3' miRNA: 3'- uGGAUgCGGCCGga-GugUaGGUCGUc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 24320 | 0.67 | 0.344409 |
Target: 5'- uGCCgACGCCGGCCcCGac-CCAGCc- -3' miRNA: 3'- -UGGaUGCGGCCGGaGUguaGGUCGuc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 2578 | 0.67 | 0.335246 |
Target: 5'- gGCCaGCG-CGGCCaaguaggacgcgcUCACGUCCAGgAGc -3' miRNA: 3'- -UGGaUGCgGCCGG-------------AGUGUAGGUCgUC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 3331 | 0.68 | 0.319046 |
Target: 5'- uCCUGCGaCGGCCaCACGuucgacgccgaggUCCAGCAc -3' miRNA: 3'- uGGAUGCgGCCGGaGUGU-------------AGGUCGUc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 22345 | 0.68 | 0.31195 |
Target: 5'- gACCUuccggcgUGCUGGCUUCGCGUucaCCAGCGa -3' miRNA: 3'- -UGGAu------GCGGCCGGAGUGUA---GGUCGUc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 11665 | 0.68 | 0.31195 |
Target: 5'- gAUCUGCGCCGGCaacugcCGCAUggcCUGGCGGu -3' miRNA: 3'- -UGGAUGCGGCCGga----GUGUA---GGUCGUC- -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 14224 | 0.68 | 0.31195 |
Target: 5'- cCCaggGCGCCGGCaagggcCGCGUCUGGCAa -3' miRNA: 3'- uGGa--UGCGGCCGga----GUGUAGGUCGUc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 30612 | 0.69 | 0.289166 |
Target: 5'- uGCCU-CGCCGGCUUU-CGUCUGGCu- -3' miRNA: 3'- -UGGAuGCGGCCGGAGuGUAGGUCGuc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 23844 | 0.69 | 0.289166 |
Target: 5'- uCCUACGgaGGCCUCACAU--GGCAc -3' miRNA: 3'- uGGAUGCggCCGGAGUGUAggUCGUc -5' |
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23169 | 3' | -58.4 | NC_005178.1 | + | 29251 | 0.69 | 0.281867 |
Target: 5'- gGCCgGCGCCGGCUUCA--UCCuGCc- -3' miRNA: 3'- -UGGaUGCGGCCGGAGUguAGGuCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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