miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23188 3' -58.4 NC_005259.1 + 41176 0.66 0.593146
Target:  5'- uGGCucGAcuUCUGCGCGaGGUA-GGCCGCg -3'
miRNA:   3'- gUCG--CU--AGACGCGCaCCGUgUCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 45865 0.66 0.582453
Target:  5'- gCAGCGAUgUGa-CGUGGUGCgAGaCCACc -3'
miRNA:   3'- -GUCGCUAgACgcGCACCGUG-UC-GGUG- -5'
23188 3' -58.4 NC_005259.1 + 26389 0.66 0.576055
Target:  5'- uCGGCGGUCaugagcccgaugucGCGCGUaGGCACcucGGCCcCg -3'
miRNA:   3'- -GUCGCUAGa-------------CGCGCA-CCGUG---UCGGuG- -5'
23188 3' -58.4 NC_005259.1 + 68812 0.66 0.571799
Target:  5'- uCGGUcAUCUaugGCGCGUGGCGCGaCgGCa -3'
miRNA:   3'- -GUCGcUAGA---CGCGCACCGUGUcGgUG- -5'
23188 3' -58.4 NC_005259.1 + 27334 0.66 0.570737
Target:  5'- gAGCGGgaUCUGCaccgcguGCGUGGCcACcGCgCACa -3'
miRNA:   3'- gUCGCU--AGACG-------CGCACCG-UGuCG-GUG- -5'
23188 3' -58.4 NC_005259.1 + 42161 0.66 0.561193
Target:  5'- gGGCGGUCUGCuCG-GGCAgGauGCCGa -3'
miRNA:   3'- gUCGCUAGACGcGCaCCGUgU--CGGUg -5'
23188 3' -58.4 NC_005259.1 + 8231 0.66 0.561193
Target:  5'- uCGGCGAgguugggCUGCGCGaacagauCAGCCGCg -3'
miRNA:   3'- -GUCGCUa------GACGCGCaccgu--GUCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 7071 0.66 0.550642
Target:  5'- gCAGCucGGUCUcucGCGCG-GGUGCcggGGCCACc -3'
miRNA:   3'- -GUCG--CUAGA---CGCGCaCCGUG---UCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 21239 0.66 0.547488
Target:  5'- aUAGCGG-CUGCGCGaUGGCcuuuuggaaaucgcGCAGCgGu -3'
miRNA:   3'- -GUCGCUaGACGCGC-ACCG--------------UGUCGgUg -5'
23188 3' -58.4 NC_005259.1 + 42817 0.67 0.528692
Target:  5'- -uGCGAUCuccagaaUGUGCGgcaGCAUGGCCGCc -3'
miRNA:   3'- guCGCUAG-------ACGCGCac-CGUGUCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 17350 0.67 0.523512
Target:  5'- aGGCGAaCggguugccgcgcggGCGCGUcgGGCACGGgCGCg -3'
miRNA:   3'- gUCGCUaGa-------------CGCGCA--CCGUGUCgGUG- -5'
23188 3' -58.4 NC_005259.1 + 6165 0.67 0.519383
Target:  5'- -cGCGAggUCgaGCGCGcGGUugacgaGCAGCCGCu -3'
miRNA:   3'- guCGCU--AGa-CGCGCaCCG------UGUCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 25053 0.67 0.509116
Target:  5'- aCAGCG-UCgGCGaugGGCGgGGCCGCc -3'
miRNA:   3'- -GUCGCuAGaCGCgcaCCGUgUCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 45397 0.67 0.498936
Target:  5'- aCGGCaGUUcccCGCGUGGCGgCAGCCAg -3'
miRNA:   3'- -GUCGcUAGac-GCGCACCGU-GUCGGUg -5'
23188 3' -58.4 NC_005259.1 + 3912 0.67 0.478856
Target:  5'- uCAGuCGAgcUCgGCuCGUGGCACGGUCAg -3'
miRNA:   3'- -GUC-GCU--AGaCGcGCACCGUGUCGGUg -5'
23188 3' -58.4 NC_005259.1 + 62449 0.68 0.45918
Target:  5'- gAGCGGUgaagCUGUGCGcGGCGugucaGGCCGCc -3'
miRNA:   3'- gUCGCUA----GACGCGCaCCGUg----UCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 62809 0.68 0.449505
Target:  5'- gGGUGAUCUGagcaGCGUGaGCGgggugAGCCGCc -3'
miRNA:   3'- gUCGCUAGACg---CGCAC-CGUg----UCGGUG- -5'
23188 3' -58.4 NC_005259.1 + 50487 0.68 0.449505
Target:  5'- uCAGCGAUCUGCccgccgauuucgGCaaGGCAgAGCC-Cg -3'
miRNA:   3'- -GUCGCUAGACG------------CGcaCCGUgUCGGuG- -5'
23188 3' -58.4 NC_005259.1 + 9716 0.68 0.449505
Target:  5'- cCAGCGGUgUGCagaccuacgcuGuCGUGGCGgCAGCgGCg -3'
miRNA:   3'- -GUCGCUAgACG-----------C-GCACCGU-GUCGgUG- -5'
23188 3' -58.4 NC_005259.1 + 8585 0.68 0.448544
Target:  5'- --uCGAUCUGCucggGgGUGGCccacgggGCGGCCACg -3'
miRNA:   3'- gucGCUAGACG----CgCACCG-------UGUCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.