miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23188 5' -57.7 NC_005259.1 + 33142 0.67 0.578577
Target:  5'- aGGUccGCCGCcGCGUCcaCCGCAGCCGc -3'
miRNA:   3'- cCCGu-UGGCGcUGUAG--GGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 38853 0.67 0.536298
Target:  5'- cGGGCAGCuCGaccgGGCcgCCUACAGgCCGc -3'
miRNA:   3'- -CCCGUUG-GCg---CUGuaGGGUGUC-GGUu -5'
23188 5' -57.7 NC_005259.1 + 41158 0.67 0.578577
Target:  5'- aGGuaGGCCGCGAgGUCgCGC-GCCGu -3'
miRNA:   3'- -CCcgUUGGCGCUgUAGgGUGuCGGUu -5'
23188 5' -57.7 NC_005259.1 + 41597 0.69 0.436311
Target:  5'- cGGCAGCgGCGGCAgCUCGguGCCc- -3'
miRNA:   3'- cCCGUUGgCGCUGUaGGGUguCGGuu -5'
23188 5' -57.7 NC_005259.1 + 45253 0.74 0.222976
Target:  5'- cGGCGACCcCGACGcCCCGCAGaCCGg -3'
miRNA:   3'- cCCGUUGGcGCUGUaGGGUGUC-GGUu -5'
23188 5' -57.7 NC_005259.1 + 49336 0.83 0.049071
Target:  5'- cGGGCAGCCGCuACAUCCC-CGGUCAGg -3'
miRNA:   3'- -CCCGUUGGCGcUGUAGGGuGUCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 49456 0.66 0.643094
Target:  5'- aGGCcgaCGCGuaugCCCGCAGCCGu -3'
miRNA:   3'- cCCGuugGCGCuguaGGGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 52425 0.7 0.39049
Target:  5'- cGGGCAgaucGCCGagGACAUcgCCCGCgaGGCCAu -3'
miRNA:   3'- -CCCGU----UGGCg-CUGUA--GGGUG--UCGGUu -5'
23188 5' -57.7 NC_005259.1 + 59862 0.69 0.440109
Target:  5'- cGGGCAGCCgugcucgugcccgucGaCGGCAUgCCggugGCAGCCGAu -3'
miRNA:   3'- -CCCGUUGG---------------C-GCUGUAgGG----UGUCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 60034 0.66 0.601076
Target:  5'- cGGGCAccguGCCGgGACGUaggugccagcggcgaCgGCAGCCGc -3'
miRNA:   3'- -CCCGU----UGGCgCUGUAg--------------GgUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 61106 0.71 0.316339
Target:  5'- cGGGCAGCCGcCGAUAgcgCaCCACcuuGCCGc -3'
miRNA:   3'- -CCCGUUGGC-GCUGUa--G-GGUGu--CGGUu -5'
23188 5' -57.7 NC_005259.1 + 62756 0.7 0.39049
Target:  5'- uGGGCGAgUGgguCGAUAUCCCGCAccGCCGc -3'
miRNA:   3'- -CCCGUUgGC---GCUGUAGGGUGU--CGGUu -5'
23188 5' -57.7 NC_005259.1 + 63284 0.68 0.485079
Target:  5'- aGGCcagcgccgGACgGCGGCcauUCUCGCGGCCAAg -3'
miRNA:   3'- cCCG--------UUGgCGCUGu--AGGGUGUCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 64073 0.69 0.436311
Target:  5'- aGGGC-ACCGCGugAUCgUcCGGCCc- -3'
miRNA:   3'- -CCCGuUGGCGCugUAGgGuGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 64726 0.66 0.632312
Target:  5'- cGGGCGGCUGCGcugccacgaGCAcggaCCgGCGGCCc- -3'
miRNA:   3'- -CCCGUUGGCGC---------UGUa---GGgUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 66452 0.66 0.632312
Target:  5'- uGGacaGAUCGCGGCGgucaacaacCUCACAGCCAc -3'
miRNA:   3'- cCCg--UUGGCGCUGUa--------GGGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 67636 0.66 0.600001
Target:  5'- uGGGCcgcucGCCGCG-CcgCCCGCgaGGCCc- -3'
miRNA:   3'- -CCCGu----UGGCGCuGuaGGGUG--UCGGuu -5'
23188 5' -57.7 NC_005259.1 + 68375 0.66 0.600001
Target:  5'- uGGUgaucGACCGUGACAaCgCCACcGCCGAg -3'
miRNA:   3'- cCCG----UUGGCGCUGUaG-GGUGuCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 68774 0.72 0.301373
Target:  5'- cGGGCAguGCUacgcaGCGAC-UCCgCGCAGCCAc -3'
miRNA:   3'- -CCCGU--UGG-----CGCUGuAGG-GUGUCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.