Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 10432 | 0.72 | 0.483791 |
|
Target: 5'- cGGuUGGGCCGgaucGCGGcgcgGcUGCCGGGCCGGa -3' miRNA: 3'- -CC-ACUCGGU----UGCCa---C-AUGGUCUGGCU- -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 67655 | 0.72 | 0.493888 |
|
Target: 5'- --cGAGCgCAACGGUGccUACUGGGCCGc -3' miRNA: 3'- ccaCUCG-GUUGCCAC--AUGGUCUGGCu -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 19100 | 0.72 | 0.504081 |
|
Target: 5'- aGGUcGuGCCcgcguacCGGgGUGCCAGACCGAu -3' miRNA: 3'- -CCA-CuCGGuu-----GCCaCAUGGUCUGGCU- -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 53861 | 0.72 | 0.514364 |
|
Target: 5'- aGGUGuacggGGCCAccuCGGUG-GCCgAGGCCGAg -3' miRNA: 3'- -CCAC-----UCGGUu--GCCACaUGG-UCUGGCU- -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 7405 | 0.72 | 0.514364 |
|
Target: 5'- cGGUGGGCCggUGGgGUcggcggggaacAgCAGACCGGc -3' miRNA: 3'- -CCACUCGGuuGCCaCA-----------UgGUCUGGCU- -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 29993 | 0.7 | 0.599124 |
|
Target: 5'- -uUGAGC--GCGGUG-ACCAGACCcGAg -3' miRNA: 3'- ccACUCGguUGCCACaUGGUCUGG-CU- -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 28557 | 0.7 | 0.599124 |
|
Target: 5'- uGGUGuguGGCCugcCGGUGUgguugacguacuGCCGGGCCGc -3' miRNA: 3'- -CCAC---UCGGuu-GCCACA------------UGGUCUGGCu -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 42189 | 0.7 | 0.631569 |
|
Target: 5'- cGGUuGGCCGguaccgGCGGUgGUGCCGGGgCGGu -3' miRNA: 3'- -CCAcUCGGU------UGCCA-CAUGGUCUgGCU- -5' |
|||||||
| 23190 | 3' | -54.3 | NC_005259.1 | + | 7497 | 0.66 | 0.851648 |
|
Target: 5'- -uUGAGgCGcuCGGUGUGCCGG-UCGAc -3' miRNA: 3'- ccACUCgGUu-GCCACAUGGUCuGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home