miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23190 5' -56.8 NC_005259.1 + 20517 0.66 0.720249
Target:  5'- cGUCGGCCUGUuccucGACGCgcuUGAGGGccGCGa -3'
miRNA:   3'- cUAGCCGGGUAu----CUGUG---GCUCCC--UGC- -5'
23190 5' -56.8 NC_005259.1 + 52566 0.66 0.699396
Target:  5'- cGAgCGGCCCAaaccGGGCACCGucGGcauCGg -3'
miRNA:   3'- -CUaGCCGGGUa---UCUGUGGCucCCu--GC- -5'
23190 5' -56.8 NC_005259.1 + 24066 0.66 0.699396
Target:  5'- uGAUCgGGUCCAUGG-CACC-AGcGGGCa -3'
miRNA:   3'- -CUAG-CCGGGUAUCuGUGGcUC-CCUGc -5'
23190 5' -56.8 NC_005259.1 + 40148 0.67 0.667681
Target:  5'- aGUCGaccGCCC-----CACCGAGGGACGu -3'
miRNA:   3'- cUAGC---CGGGuaucuGUGGCUCCCUGC- -5'
23190 5' -56.8 NC_005259.1 + 42588 0.67 0.655967
Target:  5'- gGcgCGGCggugccgCCGUAGAacgcacCGCCGAGcGGGCGg -3'
miRNA:   3'- -CuaGCCG-------GGUAUCU------GUGGCUC-CCUGC- -5'
23190 5' -56.8 NC_005259.1 + 9131 0.67 0.624997
Target:  5'- --cUGGCUCGUuGugGCCGAaaccgGGGGCGa -3'
miRNA:   3'- cuaGCCGGGUAuCugUGGCU-----CCCUGC- -5'
23190 5' -56.8 NC_005259.1 + 60052 0.67 0.624997
Target:  5'- cGGUgGGCgcgCCGUggacGGGCACCGugccGGGACGu -3'
miRNA:   3'- -CUAgCCG---GGUA----UCUGUGGCu---CCCUGC- -5'
23190 5' -56.8 NC_005259.1 + 14661 0.67 0.624997
Target:  5'- cAUCGGgCCA---GCAUCGAGGGuCGg -3'
miRNA:   3'- cUAGCCgGGUaucUGUGGCUCCCuGC- -5'
23190 5' -56.8 NC_005259.1 + 24037 0.67 0.614318
Target:  5'- --gCGGUCaucgGGAUGCCGAGGGcCGg -3'
miRNA:   3'- cuaGCCGGgua-UCUGUGGCUCCCuGC- -5'
23190 5' -56.8 NC_005259.1 + 6891 0.68 0.571831
Target:  5'- cGUCGcGCUCGUAGucaguCACCGAGGuGAUc -3'
miRNA:   3'- cUAGC-CGGGUAUCu----GUGGCUCC-CUGc -5'
23190 5' -56.8 NC_005259.1 + 3313 0.68 0.561307
Target:  5'- -cUCGGCCCGacgAGcGgGCCGAGuaGGACGa -3'
miRNA:   3'- cuAGCCGGGUa--UC-UgUGGCUC--CCUGC- -5'
23190 5' -56.8 NC_005259.1 + 65880 0.69 0.537315
Target:  5'- uGcgCGGCaCCGUGGGCAgcggacggcaccgcCCGuGGGACu -3'
miRNA:   3'- -CuaGCCG-GGUAUCUGU--------------GGCuCCCUGc -5'
23190 5' -56.8 NC_005259.1 + 59912 0.69 0.519812
Target:  5'- ---aGGCCCGUugccCGCCGAGGG-CGg -3'
miRNA:   3'- cuagCCGGGUAucu-GUGGCUCCCuGC- -5'
23190 5' -56.8 NC_005259.1 + 52316 0.75 0.239095
Target:  5'- uGGUCGGCgauCC-UGGGCACCGAGGuGACc -3'
miRNA:   3'- -CUAGCCG---GGuAUCUGUGGCUCC-CUGc -5'
23190 5' -56.8 NC_005259.1 + 26470 0.83 0.069309
Target:  5'- --cCGGCCCcgAUGGGCACCGAGGuGGCGg -3'
miRNA:   3'- cuaGCCGGG--UAUCUGUGGCUCC-CUGC- -5'
23190 5' -56.8 NC_005259.1 + 3440 1.09 0.000947
Target:  5'- aGAUCGGCCCAUAGACACCGAGGGACGg -3'
miRNA:   3'- -CUAGCCGGGUAUCUGUGGCUCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.