miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23192 3' -50.4 NC_005259.1 + 58202 0.66 0.963406
Target:  5'- aGCGCAAUGucGUAguccuugcgcacGguGCCG-AUGGa -3'
miRNA:   3'- gCGCGUUACuuCAU------------CguCGGUaUGCC- -5'
23192 3' -50.4 NC_005259.1 + 1681 0.66 0.959583
Target:  5'- uGCGCGGUGAucccuGGUAG-AGCgCGUACc- -3'
miRNA:   3'- gCGCGUUACU-----UCAUCgUCG-GUAUGcc -5'
23192 3' -50.4 NC_005259.1 + 19091 0.66 0.951132
Target:  5'- cCGCGUAccGggGUGcCAGaCCGauuUGCGGa -3'
miRNA:   3'- -GCGCGUuaCuuCAUcGUC-GGU---AUGCC- -5'
23192 3' -50.4 NC_005259.1 + 118 0.66 0.951132
Target:  5'- gCGCGcCGAUGAGGUAGaugaGGCgGUGguuugUGGu -3'
miRNA:   3'- -GCGC-GUUACUUCAUCg---UCGgUAU-----GCC- -5'
23192 3' -50.4 NC_005259.1 + 33330 0.66 0.951132
Target:  5'- aGCGCGGUGGuGGUgcacAGCGacGCCGUGCc- -3'
miRNA:   3'- gCGCGUUACU-UCA----UCGU--CGGUAUGcc -5'
23192 3' -50.4 NC_005259.1 + 67014 0.66 0.946014
Target:  5'- aCGaGCGGUcGGAGUAcaacuacGCGGCCAU-CGGg -3'
miRNA:   3'- -GCgCGUUA-CUUCAU-------CGUCGGUAuGCC- -5'
23192 3' -50.4 NC_005259.1 + 59875 0.67 0.941574
Target:  5'- aCGCGCccc--GGUacgGGCAGCCGUGCu- -3'
miRNA:   3'- -GCGCGuuacuUCA---UCGUCGGUAUGcc -5'
23192 3' -50.4 NC_005259.1 + 10333 0.67 0.93637
Target:  5'- gGUGCAccGggGU-GCAGCUuccaucGCGGg -3'
miRNA:   3'- gCGCGUuaCuuCAuCGUCGGua----UGCC- -5'
23192 3' -50.4 NC_005259.1 + 11970 0.68 0.912689
Target:  5'- gGCGCGGUGggGUcGCAcucGUCGUA-GGc -3'
miRNA:   3'- gCGCGUUACuuCAuCGU---CGGUAUgCC- -5'
23192 3' -50.4 NC_005259.1 + 60028 0.68 0.912689
Target:  5'- cCGUGCcggGAcGUAGguGCCAgcggcgACGGc -3'
miRNA:   3'- -GCGCGuuaCUuCAUCguCGGUa-----UGCC- -5'
23192 3' -50.4 NC_005259.1 + 61774 0.69 0.876732
Target:  5'- uGCGUGAUGAAcgacGGCAGCCGcgcCGGu -3'
miRNA:   3'- gCGCGUUACUUca--UCGUCGGUau-GCC- -5'
23192 3' -50.4 NC_005259.1 + 25289 0.69 0.876732
Target:  5'- cCGCGCGAccgcaucGAGUcgauGGCGGCCAUGCc- -3'
miRNA:   3'- -GCGCGUUac-----UUCA----UCGUCGGUAUGcc -5'
23192 3' -50.4 NC_005259.1 + 41164 0.69 0.876732
Target:  5'- uGCGCGAgguaggccgcGAGGUcGCGcGCCGUACGa -3'
miRNA:   3'- gCGCGUUa---------CUUCAuCGU-CGGUAUGCc -5'
23192 3' -50.4 NC_005259.1 + 17222 0.69 0.868731
Target:  5'- aGCGCcuUGAGGUauucGGC-GCUcgGCGGg -3'
miRNA:   3'- gCGCGuuACUUCA----UCGuCGGuaUGCC- -5'
23192 3' -50.4 NC_005259.1 + 26460 0.69 0.868731
Target:  5'- uGgGCAccGAGGUGGCGGgCAgcuCGGc -3'
miRNA:   3'- gCgCGUuaCUUCAUCGUCgGUau-GCC- -5'
23192 3' -50.4 NC_005259.1 + 64492 0.69 0.843227
Target:  5'- cCGCGCcg-GGAGUGGC-GCUGcGCGGc -3'
miRNA:   3'- -GCGCGuuaCUUCAUCGuCGGUaUGCC- -5'
23192 3' -50.4 NC_005259.1 + 43011 0.69 0.843227
Target:  5'- aGCGCcgaggugaacaAcgGAAGUAGCAGCgGgAUGGc -3'
miRNA:   3'- gCGCG-----------UuaCUUCAUCGUCGgUaUGCC- -5'
23192 3' -50.4 NC_005259.1 + 6154 0.7 0.834253
Target:  5'- gCGCGCGGuUGAcg-AGCAGCCGcuCGGc -3'
miRNA:   3'- -GCGCGUU-ACUucaUCGUCGGUauGCC- -5'
23192 3' -50.4 NC_005259.1 + 18582 0.7 0.834253
Target:  5'- gGUGCcuUGAccGGcucgGGCAGCgGUGCGGg -3'
miRNA:   3'- gCGCGuuACU--UCa---UCGUCGgUAUGCC- -5'
23192 3' -50.4 NC_005259.1 + 26491 0.7 0.834253
Target:  5'- gGCGguGUGGcc-AGCAGCCGUcCGGc -3'
miRNA:   3'- gCGCguUACUucaUCGUCGGUAuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.