Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23192 | 3' | -50.4 | NC_005259.1 | + | 118 | 0.66 | 0.951132 |
Target: 5'- gCGCGcCGAUGAGGUAGaugaGGCgGUGguuugUGGu -3' miRNA: 3'- -GCGC-GUUACUUCAUCg---UCGgUAU-----GCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 1681 | 0.66 | 0.959583 |
Target: 5'- uGCGCGGUGAucccuGGUAG-AGCgCGUACc- -3' miRNA: 3'- gCGCGUUACU-----UCAUCgUCG-GUAUGcc -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 1868 | 0.7 | 0.79526 |
Target: 5'- uCGUGCGugagcaccgcuGUGAgccgcuugucgauGGUGGCGGCCAUGCc- -3' miRNA: 3'- -GCGCGU-----------UACU-------------UCAUCGUCGGUAUGcc -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 4525 | 1.13 | 0.002187 |
Target: 5'- aCGCGCAAUGAAGUAGCAGCCAUACGGg -3' miRNA: 3'- -GCGCGUUACUUCAUCGUCGGUAUGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 6154 | 0.7 | 0.834253 |
Target: 5'- gCGCGCGGuUGAcg-AGCAGCCGcuCGGc -3' miRNA: 3'- -GCGCGUU-ACUucaUCGUCGGUauGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 9585 | 0.74 | 0.623386 |
Target: 5'- uCGCGC-AUGgcGUcGGCGGCCAUgaagaACGGc -3' miRNA: 3'- -GCGCGuUACuuCA-UCGUCGGUA-----UGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 10333 | 0.67 | 0.93637 |
Target: 5'- gGUGCAccGggGU-GCAGCUuccaucGCGGg -3' miRNA: 3'- gCGCGUuaCuuCAuCGUCGGua----UGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 11970 | 0.68 | 0.912689 |
Target: 5'- gGCGCGGUGggGUcGCAcucGUCGUA-GGc -3' miRNA: 3'- gCGCGUUACuuCAuCGU---CGGUAUgCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 17222 | 0.69 | 0.868731 |
Target: 5'- aGCGCcuUGAGGUauucGGC-GCUcgGCGGg -3' miRNA: 3'- gCGCGuuACUUCA----UCGuCGGuaUGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 18582 | 0.7 | 0.834253 |
Target: 5'- gGUGCcuUGAccGGcucgGGCAGCgGUGCGGg -3' miRNA: 3'- gCGCGuuACU--UCa---UCGUCGgUAUGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 19091 | 0.66 | 0.951132 |
Target: 5'- cCGCGUAccGggGUGcCAGaCCGauuUGCGGa -3' miRNA: 3'- -GCGCGUuaCuuCAUcGUC-GGU---AUGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 25289 | 0.69 | 0.876732 |
Target: 5'- cCGCGCGAccgcaucGAGUcgauGGCGGCCAUGCc- -3' miRNA: 3'- -GCGCGUUac-----UUCA----UCGUCGGUAUGcc -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 26460 | 0.69 | 0.868731 |
Target: 5'- uGgGCAccGAGGUGGCGGgCAgcuCGGc -3' miRNA: 3'- gCgCGUuaCUUCAUCGUCgGUau-GCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 26491 | 0.7 | 0.834253 |
Target: 5'- gGCGguGUGGcc-AGCAGCCGUcCGGc -3' miRNA: 3'- gCGCguUACUucaUCGUCGGUAuGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 33330 | 0.66 | 0.951132 |
Target: 5'- aGCGCGGUGGuGGUgcacAGCGacGCCGUGCc- -3' miRNA: 3'- gCGCGUUACU-UCA----UCGU--CGGUAUGcc -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 41083 | 0.71 | 0.755402 |
Target: 5'- cCGCGCGGgu-GGUAGCGGUUcgGCGa -3' miRNA: 3'- -GCGCGUUacuUCAUCGUCGGuaUGCc -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 41164 | 0.69 | 0.876732 |
Target: 5'- uGCGCGAgguaggccgcGAGGUcGCGcGCCGUACGa -3' miRNA: 3'- gCGCGUUa---------CUUCAuCGU-CGGUAUGCc -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 43011 | 0.69 | 0.843227 |
Target: 5'- aGCGCcgaggugaacaAcgGAAGUAGCAGCgGgAUGGc -3' miRNA: 3'- gCGCG-----------UuaCUUCAUCGUCGgUaUGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 51396 | 0.74 | 0.60098 |
Target: 5'- gGCGCGAUGAcGUggGGCGGCgAggACGGu -3' miRNA: 3'- gCGCGUUACUuCA--UCGUCGgUa-UGCC- -5' |
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23192 | 3' | -50.4 | NC_005259.1 | + | 58202 | 0.66 | 0.963406 |
Target: 5'- aGCGCAAUGucGUAguccuugcgcacGguGCCG-AUGGa -3' miRNA: 3'- gCGCGUUACuuCAU------------CguCGGUaUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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