miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 61599 0.76 0.092346
Target:  5'- aGACCcgcaaCGGCauccucgucgCCGUCGGCGGUGCCCg -3'
miRNA:   3'- -CUGGcuc--GCCG----------GGCAGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 27911 0.76 0.089688
Target:  5'- aGCCGgucguagucGGCGGUCggcgguaugacgaUGUCGGCGGUGCCCg -3'
miRNA:   3'- cUGGC---------UCGCCGG-------------GCAGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 21830 0.77 0.08084
Target:  5'- cACCGuAGCGGCgaagGUCGGCGGUGCCg -3'
miRNA:   3'- cUGGC-UCGCCGgg--CAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 8718 0.81 0.04228
Target:  5'- uGCCGGGCGGCCaucguCGUCGGUGcgGCCa -3'
miRNA:   3'- cUGGCUCGCCGG-----GCAGCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 58555 0.81 0.035892
Target:  5'- cAUCGAGUGGCUCGaCGGCGGUGUCCu -3'
miRNA:   3'- cUGGCUCGCCGGGCaGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 50276 0.71 0.193866
Target:  5'- cAUCGGGCcGCCCGgcaucgguaagucgUCGGUGGUGCUCg -3'
miRNA:   3'- cUGGCUCGcCGGGC--------------AGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 56463 0.71 0.200247
Target:  5'- aGCCGAGCGaGCCCcaCGGCauUGCCg -3'
miRNA:   3'- cUGGCUCGC-CGGGcaGCCGcuACGGg -5'
23193 5' -62.7 NC_005259.1 + 19444 0.69 0.268117
Target:  5'- uGCCGGGCuGUUCGUCGGUcGUGgCCa -3'
miRNA:   3'- cUGGCUCGcCGGGCAGCCGcUACgGG- -5'
23193 5' -62.7 NC_005259.1 + 28327 0.69 0.264322
Target:  5'- aGCgCGAGCgccuuggugcucaccGGCCCGaugaUCGG-GGUGCCCg -3'
miRNA:   3'- cUG-GCUCG---------------CCGGGC----AGCCgCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 10391 0.7 0.255634
Target:  5'- -uUCGAGCgccuGGCUgaUGUCGGCGAaaccgacagUGCCCa -3'
miRNA:   3'- cuGGCUCG----CCGG--GCAGCCGCU---------ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 66782 0.7 0.255634
Target:  5'- cACCGAGCgcccGGCCUcgccauuuGUCGGCGAcaGCCg -3'
miRNA:   3'- cUGGCUCG----CCGGG--------CAGCCGCUa-CGGg -5'
23193 5' -62.7 NC_005259.1 + 2358 0.7 0.249573
Target:  5'- cACCGcucggauuGCuGCCgGUCGGCGGUGCUg -3'
miRNA:   3'- cUGGCu-------CGcCGGgCAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 60884 0.7 0.249573
Target:  5'- aGACCcc-CGGCCUaGUCGGCuacgGGUGCCCc -3'
miRNA:   3'- -CUGGcucGCCGGG-CAGCCG----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 65873 0.7 0.243631
Target:  5'- cACCGugggcAGCGgacggcaccGCCCGUgggacuacaCGGUGAUGCCCg -3'
miRNA:   3'- cUGGC-----UCGC---------CGGGCA---------GCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 7704 0.7 0.22651
Target:  5'- aACgCGAGCGGCUgaUCGGUGaAUGUCCg -3'
miRNA:   3'- cUG-GCUCGCCGGgcAGCCGC-UACGGG- -5'
23193 5' -62.7 NC_005259.1 + 19562 0.7 0.22651
Target:  5'- --gCGAGCGccGCCUugGUCGGCagccgGAUGCCCa -3'
miRNA:   3'- cugGCUCGC--CGGG--CAGCCG-----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 54962 0.7 0.221033
Target:  5'- cAUCGAGCGGCagcgcaUCGUCGGCGAcGagaCCa -3'
miRNA:   3'- cUGGCUCGCCG------GGCAGCCGCUaCg--GG- -5'
23193 5' -62.7 NC_005259.1 + 28864 0.71 0.21567
Target:  5'- --gCGGGCGaGCucgCCGUCGGUugucGGUGCCCg -3'
miRNA:   3'- cugGCUCGC-CG---GGCAGCCG----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 49043 0.71 0.210419
Target:  5'- -uCCGcaacGGCGGCUCGgCGGUgugGGUGCCCg -3'
miRNA:   3'- cuGGC----UCGCCGGGCaGCCG---CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 15832 0.71 0.205278
Target:  5'- aGGCCGAucucgccaccGCcGCCCGUC-GCGGUGUCCc -3'
miRNA:   3'- -CUGGCU----------CGcCGGGCAGcCGCUACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.