miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 34548 0.69 0.290461
Target:  5'- cGACCGGGCaGCgUGUCgcugaugagcagcuuGGUGGUGUCCc -3'
miRNA:   3'- -CUGGCUCGcCGgGCAG---------------CCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 37325 0.69 0.287758
Target:  5'- cGACgGGGuuGCCCGaggcauccUCGGCGGUGaCCa -3'
miRNA:   3'- -CUGgCUCgcCGGGC--------AGCCGCUACgGG- -5'
23193 5' -62.7 NC_005259.1 + 37834 0.67 0.361307
Target:  5'- uAUCGAGCucGCCCuugagccaGUCGGCGAggaUGCCg -3'
miRNA:   3'- cUGGCUCGc-CGGG--------CAGCCGCU---ACGGg -5'
23193 5' -62.7 NC_005259.1 + 39063 0.68 0.304273
Target:  5'- uGGCCGccacGCGGCCCgGUCgcggcugguggggcgGGCGGUGaCCg -3'
miRNA:   3'- -CUGGCu---CGCCGGG-CAG---------------CCGCUACgGG- -5'
23193 5' -62.7 NC_005259.1 + 39600 0.68 0.330392
Target:  5'- cACCGAG-GGCC--UCGGCGA-GCUCg -3'
miRNA:   3'- cUGGCUCgCCGGgcAGCCGCUaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 40246 0.66 0.411325
Target:  5'- -cCCGAGCGuGagaUCGUCGcCGGUGCCg -3'
miRNA:   3'- cuGGCUCGC-Cg--GGCAGCcGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 41613 0.73 0.158407
Target:  5'- uGACCG-GCGGCggUGUCGGCagcggcggcagcucGGUGCCCg -3'
miRNA:   3'- -CUGGCuCGCCGg-GCAGCCG--------------CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 42166 0.68 0.337934
Target:  5'- uGCCgGGGCGGUCUGcUCGGgcagGAUGCCg -3'
miRNA:   3'- cUGG-CUCGCCGGGC-AGCCg---CUACGGg -5'
23193 5' -62.7 NC_005259.1 + 42560 0.66 0.402694
Target:  5'- cGCCGAGCgggcgGGCCgGUgGGcCGAUGUg- -3'
miRNA:   3'- cUGGCUCG-----CCGGgCAgCC-GCUACGgg -5'
23193 5' -62.7 NC_005259.1 + 42645 0.68 0.322974
Target:  5'- gGGCCGAGCuGCgCGUagaugucggUGGCGA-GCCUg -3'
miRNA:   3'- -CUGGCUCGcCGgGCA---------GCCGCUaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 42849 0.66 0.437891
Target:  5'- aGGCCGAGCaGCCCGaaa---AUGCCCg -3'
miRNA:   3'- -CUGGCUCGcCGGGCagccgcUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 44193 0.66 0.428926
Target:  5'- aGACCGAG-GuGCCC--CGGCacgccGUGCCCg -3'
miRNA:   3'- -CUGGCUCgC-CGGGcaGCCGc----UACGGG- -5'
23193 5' -62.7 NC_005259.1 + 44526 0.67 0.38578
Target:  5'- cGACCgGAGa-GCUCGuccUCGGCGAUGUCa -3'
miRNA:   3'- -CUGG-CUCgcCGGGC---AGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 46271 0.66 0.411325
Target:  5'- cGCCGAGCGccaGCCCGUauacgaGGCGuaccgaaacgGCaCCg -3'
miRNA:   3'- cUGGCUCGC---CGGGCAg-----CCGCua--------CG-GG- -5'
23193 5' -62.7 NC_005259.1 + 49043 0.71 0.210419
Target:  5'- -uCCGcaacGGCGGCUCGgCGGUgugGGUGCCCg -3'
miRNA:   3'- cuGGC----UCGCCGGGCaGCCG---CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 49788 0.68 0.337934
Target:  5'- gGugCGGGCGGCgacgugggacaCCGagUCGGCGAUgaucgauggccGCCUg -3'
miRNA:   3'- -CugGCUCGCCG-----------GGC--AGCCGCUA-----------CGGG- -5'
23193 5' -62.7 NC_005259.1 + 49842 0.69 0.280428
Target:  5'- cGAUCaGGGUcgaGGUUCGUCGGCGcucaacgGUGCCCu -3'
miRNA:   3'- -CUGG-CUCG---CCGGGCAGCCGC-------UACGGG- -5'
23193 5' -62.7 NC_005259.1 + 50276 0.71 0.193866
Target:  5'- cAUCGGGCcGCCCGgcaucgguaagucgUCGGUGGUGCUCg -3'
miRNA:   3'- cUGGCUCGcCGGGC--------------AGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 51685 0.72 0.176673
Target:  5'- cGCCGAGCGGuacCCCGagGGUG-UGCCg -3'
miRNA:   3'- cUGGCUCGCC---GGGCagCCGCuACGGg -5'
23193 5' -62.7 NC_005259.1 + 52376 0.67 0.361307
Target:  5'- gGGCCGAGgcaGGCCaccuaCGGCGAcGCCg -3'
miRNA:   3'- -CUGGCUCg--CCGGgca--GCCGCUaCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.