miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 17587 0.68 0.322974
Target:  5'- cGCCGAGgGGCCgGUUgaggucuugGGCGG-GCCa -3'
miRNA:   3'- cUGGCUCgCCGGgCAG---------CCGCUaCGGg -5'
23193 5' -62.7 NC_005259.1 + 17934 0.66 0.446963
Target:  5'- aAUCGAGCaGCgCC-UCGGUGGcaugGCCCa -3'
miRNA:   3'- cUGGCUCGcCG-GGcAGCCGCUa---CGGG- -5'
23193 5' -62.7 NC_005259.1 + 19369 0.68 0.308513
Target:  5'- cAUCG-GCGGCagccgCGUCGGCGAUGgCg -3'
miRNA:   3'- cUGGCuCGCCGg----GCAGCCGCUACgGg -5'
23193 5' -62.7 NC_005259.1 + 19444 0.69 0.268117
Target:  5'- uGCCGGGCuGUUCGUCGGUcGUGgCCa -3'
miRNA:   3'- cUGGCUCGcCGGGCAGCCGcUACgGG- -5'
23193 5' -62.7 NC_005259.1 + 19562 0.7 0.22651
Target:  5'- --gCGAGCGccGCCUugGUCGGCagccgGAUGCCCa -3'
miRNA:   3'- cugGCUCGC--CGGG--CAGCCG-----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 21830 0.77 0.08084
Target:  5'- cACCGuAGCGGCgaagGUCGGCGGUGCCg -3'
miRNA:   3'- cUGGC-UCGCCGgg--CAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 22091 0.67 0.361307
Target:  5'- cGCCGAGCaGUCCG-CGuGCGccgccgagcuUGCCCg -3'
miRNA:   3'- cUGGCUCGcCGGGCaGC-CGCu---------ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 22169 0.68 0.330392
Target:  5'- uGAgUGAGC-GCCC--CGGCGAgcUGCCCg -3'
miRNA:   3'- -CUgGCUCGcCGGGcaGCCGCU--ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 23368 0.68 0.337934
Target:  5'- gGGCCGGGCaGCgCGcCGGUGccGCCg -3'
miRNA:   3'- -CUGGCUCGcCGgGCaGCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 23909 0.66 0.428926
Target:  5'- -gUCGAGCGuGCCCGUguagcCGGUcgggccgagaguGGUGCCg -3'
miRNA:   3'- cuGGCUCGC-CGGGCA-----GCCG------------CUACGGg -5'
23193 5' -62.7 NC_005259.1 + 24425 0.67 0.369343
Target:  5'- cGACCG-GCaGGCUCaugauguUCGGC-AUGCCCg -3'
miRNA:   3'- -CUGGCuCG-CCGGGc------AGCCGcUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 27611 0.66 0.446963
Target:  5'- uGGCCGguacccauGGCGcGCCgcUCGG-GGUGCCCa -3'
miRNA:   3'- -CUGGC--------UCGC-CGGgcAGCCgCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 27911 0.76 0.089688
Target:  5'- aGCCGgucguagucGGCGGUCggcgguaugacgaUGUCGGCGGUGCCCg -3'
miRNA:   3'- cUGGC---------UCGCCGG-------------GCAGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 27942 0.66 0.420069
Target:  5'- cACCGAGUGcGCCCa-CGGCucGAUGUCa -3'
miRNA:   3'- cUGGCUCGC-CGGGcaGCCG--CUACGGg -5'
23193 5' -62.7 NC_005259.1 + 28232 0.74 0.126586
Target:  5'- -gUCGAGCaucuGCUCGUCGGCGAUGaCCUg -3'
miRNA:   3'- cuGGCUCGc---CGGGCAGCCGCUAC-GGG- -5'
23193 5' -62.7 NC_005259.1 + 28327 0.69 0.264322
Target:  5'- aGCgCGAGCgccuuggugcucaccGGCCCGaugaUCGG-GGUGCCCg -3'
miRNA:   3'- cUG-GCUCG---------------CCGGGC----AGCCgCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 28864 0.71 0.21567
Target:  5'- --gCGGGCGaGCucgCCGUCGGUugucGGUGCCCg -3'
miRNA:   3'- cugGCUCGC-CG---GGCAGCCG----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 29170 0.67 0.353392
Target:  5'- cAUUGAGCGcGUUgGUCGGCGAcaggaUGCCg -3'
miRNA:   3'- cUGGCUCGC-CGGgCAGCCGCU-----ACGGg -5'
23193 5' -62.7 NC_005259.1 + 29605 0.66 0.394178
Target:  5'- cGCUGAGCuuGGUCCaccccgaGGCGGUGCCg -3'
miRNA:   3'- cUGGCUCG--CCGGGcag----CCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 31742 0.67 0.343288
Target:  5'- cGCCGuugccaggcuugaGGCcGCCCGgcaggacuugcaUGGCGGUGCCCg -3'
miRNA:   3'- cUGGC-------------UCGcCGGGCa-----------GCCGCUACGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.