miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 1165 0.66 0.402694
Target:  5'- cGACCG-GCaGCCCGgugagCGGgucgaccaauCGGUGCCg -3'
miRNA:   3'- -CUGGCuCGcCGGGCa----GCC----------GCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 1570 0.74 0.126586
Target:  5'- uGCCGGGCucacgcuuGaGCgCGUCGGgGAUGCCCu -3'
miRNA:   3'- cUGGCUCG--------C-CGgGCAGCCgCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 2358 0.7 0.249573
Target:  5'- cACCGcucggauuGCuGCCgGUCGGCGGUGCUg -3'
miRNA:   3'- cUGGCu-------CGcCGGgCAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 4864 1.1 0.000257
Target:  5'- uGACCGAGCGGCCCGUCGGCGAUGCCCu -3'
miRNA:   3'- -CUGGCUCGCCGGGCAGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 5573 0.67 0.369343
Target:  5'- uGCCGAGCaGCCgcUCgGGCGAgacaucgagGCCCa -3'
miRNA:   3'- cUGGCUCGcCGGgcAG-CCGCUa--------CGGG- -5'
23193 5' -62.7 NC_005259.1 + 6335 0.68 0.301471
Target:  5'- aGACCGAGCgaGGCCaCGaccUCGuccucgaguGCGGUGUCCc -3'
miRNA:   3'- -CUGGCUCG--CCGG-GC---AGC---------CGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 7704 0.7 0.22651
Target:  5'- aACgCGAGCGGCUgaUCGGUGaAUGUCCg -3'
miRNA:   3'- cUG-GCUCGCCGGgcAGCCGC-UACGGG- -5'
23193 5' -62.7 NC_005259.1 + 8191 0.72 0.176673
Target:  5'- -cCCGAGgcCGGaaaUCGUCGGCGAUGCUg -3'
miRNA:   3'- cuGGCUC--GCCg--GGCAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 8431 0.69 0.293867
Target:  5'- uGCCGAcggucagGCGGCCCa-CGGCGAgucgggUGCCg -3'
miRNA:   3'- cUGGCU-------CGCCGGGcaGCCGCU------ACGGg -5'
23193 5' -62.7 NC_005259.1 + 8465 0.75 0.099978
Target:  5'- gGGCCGGGaCGcagccGCUCGUCGGC-AUGCCCg -3'
miRNA:   3'- -CUGGCUC-GC-----CGGGCAGCCGcUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 8718 0.81 0.04228
Target:  5'- uGCCGGGCGGCCaucguCGUCGGUGcgGCCa -3'
miRNA:   3'- cUGGCUCGCCGG-----GCAGCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 8848 0.68 0.337174
Target:  5'- uGGCCGccgccucAGCGGCCUcacgggCGGCGAacgccUGCUCg -3'
miRNA:   3'- -CUGGC-------UCGCCGGGca----GCCGCU-----ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 8883 0.67 0.38578
Target:  5'- cGACuCGAuaucgGCGGCCuCGUCcuGCGcgGCCUn -3'
miRNA:   3'- -CUG-GCU-----CGCCGG-GCAGc-CGCuaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 8928 0.66 0.394178
Target:  5'- aGGCuCGGGCGGCUCGcCgacuuucucgauGGCGA-GCUCg -3'
miRNA:   3'- -CUG-GCUCGCCGGGCaG------------CCGCUaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 10029 0.69 0.268117
Target:  5'- -gUCGGGCaGCUCGUCGGCGAcgGCg- -3'
miRNA:   3'- cuGGCUCGcCGGGCAGCCGCUa-CGgg -5'
23193 5' -62.7 NC_005259.1 + 10391 0.7 0.255634
Target:  5'- -uUCGAGCgccuGGCUgaUGUCGGCGAaaccgacagUGCCCa -3'
miRNA:   3'- cuGGCUCG----CCGG--GCAGCCGCU---------ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 10441 0.67 0.353392
Target:  5'- cGGCuCGGGCGGUugggCCGgaucgCGGCGcgGCUg -3'
miRNA:   3'- -CUG-GCUCGCCG----GGCa----GCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 12625 0.74 0.136475
Target:  5'- aGCCGucGCgGGCCgCGUCGGCugaucgucucgauGGUGCCCg -3'
miRNA:   3'- cUGGCu-CG-CCGG-GCAGCCG-------------CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 14829 0.66 0.400127
Target:  5'- uACCGcaacuguugaucuuGGUGGCCC-UCaGGCGGcgGCCCu -3'
miRNA:   3'- cUGGC--------------UCGCCGGGcAG-CCGCUa-CGGG- -5'
23193 5' -62.7 NC_005259.1 + 15832 0.71 0.205278
Target:  5'- aGGCCGAucucgccaccGCcGCCCGUC-GCGGUGUCCc -3'
miRNA:   3'- -CUGGCU----------CGcCGGGCAGcCGCUACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.