miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 66922 0.66 0.437891
Target:  5'- aAUUGGGCgGGCCUGcucgauuucaUCGGCGAgGCCa -3'
miRNA:   3'- cUGGCUCG-CCGGGC----------AGCCGCUaCGGg -5'
23193 5' -62.7 NC_005259.1 + 66782 0.7 0.255634
Target:  5'- cACCGAGCgcccGGCCUcgccauuuGUCGGCGAcaGCCg -3'
miRNA:   3'- cUGGCUCG----CCGGG--------CAGCCGCUa-CGGg -5'
23193 5' -62.7 NC_005259.1 + 65873 0.7 0.243631
Target:  5'- cACCGugggcAGCGgacggcaccGCCCGUgggacuacaCGGUGAUGCCCg -3'
miRNA:   3'- cUGGC-----UCGC---------CGGGCA---------GCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 65029 0.66 0.437891
Target:  5'- gGACCuGAGCGGuCCCG-CGagcacGCGAUGgCg -3'
miRNA:   3'- -CUGG-CUCGCC-GGGCaGC-----CGCUACgGg -5'
23193 5' -62.7 NC_005259.1 + 64311 0.66 0.411325
Target:  5'- gGGCCGAcagcuCGGcCCCGUgGuGCGAUgaccgcGCCCg -3'
miRNA:   3'- -CUGGCUc----GCC-GGGCAgC-CGCUA------CGGG- -5'
23193 5' -62.7 NC_005259.1 + 63277 0.69 0.283742
Target:  5'- cGCCGGacggcggccauucucGCGGCCaagCGGCGAgcUGCCUg -3'
miRNA:   3'- cUGGCU---------------CGCCGGgcaGCCGCU--ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 62624 0.69 0.268117
Target:  5'- cGCCGGGCgcgauGGUCaaCGUCauuuucgaGGCGGUGCCCu -3'
miRNA:   3'- cUGGCUCG-----CCGG--GCAG--------CCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 62547 0.69 0.281088
Target:  5'- cGCUGAuCGGCagCGUCGcCGGUGCCCu -3'
miRNA:   3'- cUGGCUcGCCGg-GCAGCcGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 61599 0.76 0.092346
Target:  5'- aGACCcgcaaCGGCauccucgucgCCGUCGGCGGUGCCCg -3'
miRNA:   3'- -CUGGcuc--GCCG----------GGCAGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 60884 0.7 0.249573
Target:  5'- aGACCcc-CGGCCUaGUCGGCuacgGGUGCCCc -3'
miRNA:   3'- -CUGGcucGCCGGG-CAGCCG----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 60642 0.68 0.330392
Target:  5'- uGCCGguaucgcucggcGGCGGCCuCGgcaUCGGCGAgaGCCUc -3'
miRNA:   3'- cUGGC------------UCGCCGG-GC---AGCCGCUa-CGGG- -5'
23193 5' -62.7 NC_005259.1 + 59457 0.67 0.377502
Target:  5'- cACCggaGAGCuGCCCGgccucgaccgcgUCGGCGAggUGCUCg -3'
miRNA:   3'- cUGG---CUCGcCGGGC------------AGCCGCU--ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 58555 0.81 0.035892
Target:  5'- cAUCGAGUGGCUCGaCGGCGGUGUCCu -3'
miRNA:   3'- cUGGCUCGCCGGGCaGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 57687 0.66 0.428926
Target:  5'- aGGCCGAGacgGGCgcgcagcucgUCGUCGGUcAUGCCg -3'
miRNA:   3'- -CUGGCUCg--CCG----------GGCAGCCGcUACGGg -5'
23193 5' -62.7 NC_005259.1 + 56463 0.71 0.200247
Target:  5'- aGCCGAGCGaGCCCcaCGGCauUGCCg -3'
miRNA:   3'- cUGGCUCGC-CGGGcaGCCGcuACGGg -5'
23193 5' -62.7 NC_005259.1 + 55899 0.66 0.402694
Target:  5'- cACCGAcccCGGCCCGcUCGGCG--GCUa -3'
miRNA:   3'- cUGGCUc--GCCGGGC-AGCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 55563 0.68 0.322974
Target:  5'- gGGCCGcgcuaGGCGuGaCCGUCGGCGcgGCgCu -3'
miRNA:   3'- -CUGGC-----UCGC-CgGGCAGCCGCuaCGgG- -5'
23193 5' -62.7 NC_005259.1 + 54962 0.7 0.221033
Target:  5'- cAUCGAGCGGCagcgcaUCGUCGGCGAcGagaCCa -3'
miRNA:   3'- cUGGCUCGCCG------GGCAGCCGCUaCg--GG- -5'
23193 5' -62.7 NC_005259.1 + 52581 0.72 0.176673
Target:  5'- cACCGAG-GuGCCCGUCGaGCG--GCCCa -3'
miRNA:   3'- cUGGCUCgC-CGGGCAGC-CGCuaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 52376 0.67 0.361307
Target:  5'- gGGCCGAGgcaGGCCaccuaCGGCGAcGCCg -3'
miRNA:   3'- -CUGGCUCg--CCGGgca--GCCGCUaCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.