Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23193 | 5' | -62.7 | NC_005259.1 | + | 7704 | 0.7 | 0.22651 |
Target: 5'- aACgCGAGCGGCUgaUCGGUGaAUGUCCg -3' miRNA: 3'- cUG-GCUCGCCGGgcAGCCGC-UACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 19562 | 0.7 | 0.22651 |
Target: 5'- --gCGAGCGccGCCUugGUCGGCagccgGAUGCCCa -3' miRNA: 3'- cugGCUCGC--CGGG--CAGCCG-----CUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 65873 | 0.7 | 0.243631 |
Target: 5'- cACCGugggcAGCGgacggcaccGCCCGUgggacuacaCGGUGAUGCCCg -3' miRNA: 3'- cUGGC-----UCGC---------CGGGCA---------GCCGCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 60884 | 0.7 | 0.249573 |
Target: 5'- aGACCcc-CGGCCUaGUCGGCuacgGGUGCCCc -3' miRNA: 3'- -CUGGcucGCCGGG-CAGCCG----CUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 2358 | 0.7 | 0.249573 |
Target: 5'- cACCGcucggauuGCuGCCgGUCGGCGGUGCUg -3' miRNA: 3'- cUGGCu-------CGcCGGgCAGCCGCUACGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 10391 | 0.7 | 0.255634 |
Target: 5'- -uUCGAGCgccuGGCUgaUGUCGGCGAaaccgacagUGCCCa -3' miRNA: 3'- cuGGCUCG----CCGG--GCAGCCGCU---------ACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 66782 | 0.7 | 0.255634 |
Target: 5'- cACCGAGCgcccGGCCUcgccauuuGUCGGCGAcaGCCg -3' miRNA: 3'- cUGGCUCG----CCGGG--------CAGCCGCUa-CGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 28327 | 0.69 | 0.264322 |
Target: 5'- aGCgCGAGCgccuuggugcucaccGGCCCGaugaUCGG-GGUGCCCg -3' miRNA: 3'- cUG-GCUCG---------------CCGGGC----AGCCgCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 19444 | 0.69 | 0.268117 |
Target: 5'- uGCCGGGCuGUUCGUCGGUcGUGgCCa -3' miRNA: 3'- cUGGCUCGcCGGGCAGCCGcUACgGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 10029 | 0.69 | 0.268117 |
Target: 5'- -gUCGGGCaGCUCGUCGGCGAcgGCg- -3' miRNA: 3'- cuGGCUCGcCGGGCAGCCGCUa-CGgg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 62624 | 0.69 | 0.268117 |
Target: 5'- cGCCGGGCgcgauGGUCaaCGUCauuuucgaGGCGGUGCCCu -3' miRNA: 3'- cUGGCUCG-----CCGG--GCAG--------CCGCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 49842 | 0.69 | 0.280428 |
Target: 5'- cGAUCaGGGUcgaGGUUCGUCGGCGcucaacgGUGCCCu -3' miRNA: 3'- -CUGG-CUCG---CCGGGCAGCCGC-------UACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 62547 | 0.69 | 0.281088 |
Target: 5'- cGCUGAuCGGCagCGUCGcCGGUGCCCu -3' miRNA: 3'- cUGGCUcGCCGg-GCAGCcGCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 63277 | 0.69 | 0.283742 |
Target: 5'- cGCCGGacggcggccauucucGCGGCCaagCGGCGAgcUGCCUg -3' miRNA: 3'- cUGGCU---------------CGCCGGgcaGCCGCU--ACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 37325 | 0.69 | 0.287758 |
Target: 5'- cGACgGGGuuGCCCGaggcauccUCGGCGGUGaCCa -3' miRNA: 3'- -CUGgCUCgcCGGGC--------AGCCGCUACgGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 34548 | 0.69 | 0.290461 |
Target: 5'- cGACCGGGCaGCgUGUCgcugaugagcagcuuGGUGGUGUCCc -3' miRNA: 3'- -CUGGCUCGcCGgGCAG---------------CCGCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 8431 | 0.69 | 0.293867 |
Target: 5'- uGCCGAcggucagGCGGCCCa-CGGCGAgucgggUGCCg -3' miRNA: 3'- cUGGCU-------CGCCGGGcaGCCGCU------ACGGg -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 6335 | 0.68 | 0.301471 |
Target: 5'- aGACCGAGCgaGGCCaCGaccUCGuccucgaguGCGGUGUCCc -3' miRNA: 3'- -CUGGCUCG--CCGG-GC---AGC---------CGCUACGGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 39063 | 0.68 | 0.304273 |
Target: 5'- uGGCCGccacGCGGCCCgGUCgcggcugguggggcgGGCGGUGaCCg -3' miRNA: 3'- -CUGGCu---CGCCGGG-CAG---------------CCGCUACgGG- -5' |
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23193 | 5' | -62.7 | NC_005259.1 | + | 19369 | 0.68 | 0.308513 |
Target: 5'- cAUCG-GCGGCagccgCGUCGGCGAUGgCg -3' miRNA: 3'- cUGGCuCGCCGg----GCAGCCGCUACgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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