miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23195 3' -56.8 NC_005259.1 + 1439 0.66 0.669116
Target:  5'- uCG-GGCUGGCACUGCuc-GCGU-GCUu -3'
miRNA:   3'- -GCaCCGGUCGUGGCGuaaCGCAuCGA- -5'
23195 3' -56.8 NC_005259.1 + 2019 0.67 0.625769
Target:  5'- gGUGGCgcacCGGCACCuCAgUGCGgugGGCg -3'
miRNA:   3'- gCACCG----GUCGUGGcGUaACGCa--UCGa -5'
23195 3' -56.8 NC_005259.1 + 8770 0.68 0.561078
Target:  5'- -uUGGCCAGCGCgGCggUGaugAGCUc -3'
miRNA:   3'- gcACCGGUCGUGgCGuaACgcaUCGA- -5'
23195 3' -56.8 NC_005259.1 + 9818 0.66 0.679894
Target:  5'- ---cGCCcGCACCGCcgggUGCGgcGCUg -3'
miRNA:   3'- gcacCGGuCGUGGCGua--ACGCauCGA- -5'
23195 3' -56.8 NC_005259.1 + 15393 0.66 0.679894
Target:  5'- cCGUGGCCGcGCACUcccaaggguGCGcUGCGU-GCc -3'
miRNA:   3'- -GCACCGGU-CGUGG---------CGUaACGCAuCGa -5'
23195 3' -56.8 NC_005259.1 + 22208 0.69 0.488187
Target:  5'- aCGuUGGCCAccgcGCACCGCc--GCGaGGCUg -3'
miRNA:   3'- -GC-ACCGGU----CGUGGCGuaaCGCaUCGA- -5'
23195 3' -56.8 NC_005259.1 + 23596 0.68 0.550445
Target:  5'- gCGUGGCaCGGCAguuccCCGCGUgGCGgcAGCc -3'
miRNA:   3'- -GCACCG-GUCGU-----GGCGUAaCGCa-UCGa -5'
23195 3' -56.8 NC_005259.1 + 26353 0.66 0.658305
Target:  5'- uCG-GGCCgAGCugCGCGUagaUGUcgGUGGCg -3'
miRNA:   3'- -GCaCCGG-UCGugGCGUA---ACG--CAUCGa -5'
23195 3' -56.8 NC_005259.1 + 26814 0.66 0.636622
Target:  5'- -uUGGCCGGUACCGgCGguggUGCcggGGCg -3'
miRNA:   3'- gcACCGGUCGUGGC-GUa---ACGca-UCGa -5'
23195 3' -56.8 NC_005259.1 + 28292 0.66 0.679894
Target:  5'- uGUaGGCCacGGUGCCGCccUGCGcAGCg -3'
miRNA:   3'- gCA-CCGG--UCGUGGCGuaACGCaUCGa -5'
23195 3' -56.8 NC_005259.1 + 35663 0.7 0.420057
Target:  5'- gGUGGCCAGCGCgGUGguggUGCacAGCg -3'
miRNA:   3'- gCACCGGUCGUGgCGUa---ACGcaUCGa -5'
23195 3' -56.8 NC_005259.1 + 36236 0.7 0.448571
Target:  5'- -uUGGCCAGCGCgaGCGccUGCGUcGGCa -3'
miRNA:   3'- gcACCGGUCGUGg-CGUa-ACGCA-UCGa -5'
23195 3' -56.8 NC_005259.1 + 38746 0.66 0.690627
Target:  5'- gGUGGCC--CGCCGCAggccgGUG-AGCUg -3'
miRNA:   3'- gCACCGGucGUGGCGUaa---CGCaUCGA- -5'
23195 3' -56.8 NC_005259.1 + 39820 0.66 0.658305
Target:  5'- -uUGGCCAGCGCauugagCGCGUUG-GUcGGCg -3'
miRNA:   3'- gcACCGGUCGUG------GCGUAACgCA-UCGa -5'
23195 3' -56.8 NC_005259.1 + 41663 0.69 0.498349
Target:  5'- gGUGaGCgGgaucuGCACCGCGU-GCGUGGCc -3'
miRNA:   3'- gCAC-CGgU-----CGUGGCGUAaCGCAUCGa -5'
23195 3' -56.8 NC_005259.1 + 42514 0.66 0.636622
Target:  5'- uGUGGCCAGCAgCCGUccgGCcccgaugGGCa -3'
miRNA:   3'- gCACCGGUCGU-GGCGuaaCGca-----UCGa -5'
23195 3' -56.8 NC_005259.1 + 45336 0.75 0.20564
Target:  5'- gCGUGGCCuGCGCCGCcugggccgccGCGUAGUc -3'
miRNA:   3'- -GCACCGGuCGUGGCGuaa-------CGCAUCGa -5'
23195 3' -56.8 NC_005259.1 + 45511 0.72 0.341493
Target:  5'- uGUGGCCAccGCGCCGgUGUUGgccgcCGUGGCUg -3'
miRNA:   3'- gCACCGGU--CGUGGC-GUAAC-----GCAUCGA- -5'
23195 3' -56.8 NC_005259.1 + 45782 0.72 0.32554
Target:  5'- gGU-GCCAGCACCGCGUUGaCGguguccuGCUu -3'
miRNA:   3'- gCAcCGGUCGUGGCGUAAC-GCau-----CGA- -5'
23195 3' -56.8 NC_005259.1 + 48052 0.66 0.658305
Target:  5'- gGUGGCCacggcggguAGCGCCGCc--GCGcccugAGCg -3'
miRNA:   3'- gCACCGG---------UCGUGGCGuaaCGCa----UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.