miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23195 3' -56.8 NC_005259.1 + 63866 0.71 0.383799
Target:  5'- gGUGGCCGGCugGCCuuGCGUggGCGUGGa- -3'
miRNA:   3'- gCACCGGUCG--UGG--CGUAa-CGCAUCga -5'
23195 3' -56.8 NC_005259.1 + 58450 0.71 0.358003
Target:  5'- gGUGGCCuuGGUgAUCGCGgccaccagUGCGUGGCUg -3'
miRNA:   3'- gCACCGG--UCG-UGGCGUa-------ACGCAUCGA- -5'
23195 3' -56.8 NC_005259.1 + 45511 0.72 0.341493
Target:  5'- uGUGGCCAccGCGCCGgUGUUGgccgcCGUGGCUg -3'
miRNA:   3'- gCACCGGU--CGUGGC-GUAAC-----GCAUCGA- -5'
23195 3' -56.8 NC_005259.1 + 45782 0.72 0.32554
Target:  5'- gGU-GCCAGCACCGCGUUGaCGguguccuGCUu -3'
miRNA:   3'- gCAcCGGUCGUGGCGUAAC-GCau-----CGA- -5'
23195 3' -56.8 NC_005259.1 + 45336 0.75 0.20564
Target:  5'- gCGUGGCCuGCGCCGCcugggccgccGCGUAGUc -3'
miRNA:   3'- -GCACCGGuCGUGGCGuaa-------CGCAUCGa -5'
23195 3' -56.8 NC_005259.1 + 62627 1.07 0.001078
Target:  5'- cCGUGGCCAGCACCGCAUUGCGUAGCUu -3'
miRNA:   3'- -GCACCGGUCGUGGCGUAACGCAUCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.