miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 5' -54.1 NC_005259.1 + 64234 0.68 0.748505
Target:  5'- -aUCGGGGucgauaGCCGACGGgaucaacgugGUGCGCg -3'
miRNA:   3'- ugAGUUCCug----UGGCUGCCa---------CAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 4260 0.68 0.748505
Target:  5'- gACUgCGAGGACaACgGGCGGc-UGCGCUg -3'
miRNA:   3'- -UGA-GUUCCUG-UGgCUGCCacAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56094 0.68 0.747482
Target:  5'- uGCUCGucGGGGcCACCGcguggccaccgaaACuGUGUGCGCUg -3'
miRNA:   3'- -UGAGU--UCCU-GUGGC-------------UGcCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 20400 0.68 0.73823
Target:  5'- gACguagCAAGGGCAUCGAggucuaccCGGUcaccgACGCCa -3'
miRNA:   3'- -UGa---GUUCCUGUGGCU--------GCCAca---UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 52207 0.68 0.727852
Target:  5'- gGCUCAuGGGCACCG-CGuuccGCGCCc -3'
miRNA:   3'- -UGAGUuCCUGUGGCuGCcacaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 23304 0.68 0.727852
Target:  5'- -aUCGGGGuccgGCGCgGuCGGUGU-CGCCg -3'
miRNA:   3'- ugAGUUCC----UGUGgCuGCCACAuGCGG- -5'
23200 5' -54.1 NC_005259.1 + 63651 0.68 0.717381
Target:  5'- uGCUCGcuggccGGGACGCCGGacaccuCGGgcaccgGcGCGCCg -3'
miRNA:   3'- -UGAGU------UCCUGUGGCU------GCCa-----CaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 65401 0.68 0.717381
Target:  5'- --aCAAGGACACCGucaugcucACGGUG---GCCa -3'
miRNA:   3'- ugaGUUCCUGUGGC--------UGCCACaugCGG- -5'
23200 5' -54.1 NC_005259.1 + 10075 0.69 0.706828
Target:  5'- cCUCGcAGGACGCCGACGaGUagaccccgAgGCCa -3'
miRNA:   3'- uGAGU-UCCUGUGGCUGC-CAca------UgCGG- -5'
23200 5' -54.1 NC_005259.1 + 9702 0.69 0.706828
Target:  5'- cGCUCAcuGGGCACCGuccuCGGgccgGUcgagcuCGCCg -3'
miRNA:   3'- -UGAGUu-CCUGUGGCu---GCCa---CAu-----GCGG- -5'
23200 5' -54.1 NC_005259.1 + 2693 0.69 0.696205
Target:  5'- cGCaUCGAGGACAagGACGGUuucacCGCCg -3'
miRNA:   3'- -UG-AGUUCCUGUggCUGCCAcau--GCGG- -5'
23200 5' -54.1 NC_005259.1 + 16693 0.69 0.674789
Target:  5'- -aUCcuGGGCACCGA-GGUGacCGCCg -3'
miRNA:   3'- ugAGuuCCUGUGGCUgCCACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 64603 0.69 0.674789
Target:  5'- --aCGAGGugACUGACGGcGaGCGCg -3'
miRNA:   3'- ugaGUUCCugUGGCUGCCaCaUGCGg -5'
23200 5' -54.1 NC_005259.1 + 37269 0.7 0.65754
Target:  5'- gGCUUGAGGcCGCCcggcaggacuugcauGGCGGUGccCGCCg -3'
miRNA:   3'- -UGAGUUCCuGUGG---------------CUGCCACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 53009 0.7 0.653217
Target:  5'- cCUCGAcuGGGCGCUG-CGGUG-GCGUCg -3'
miRNA:   3'- uGAGUU--CCUGUGGCuGCCACaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 30959 0.7 0.653217
Target:  5'- cGC-CGAGcACACCGAUGGUGUA-GCa -3'
miRNA:   3'- -UGaGUUCcUGUGGCUGCCACAUgCGg -5'
23200 5' -54.1 NC_005259.1 + 57311 0.7 0.649973
Target:  5'- -aUCGA--GCACCGGCGGUGUcgguguggucauguGCGCUg -3'
miRNA:   3'- ugAGUUccUGUGGCUGCCACA--------------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 61215 0.7 0.631569
Target:  5'- -aUCGcAGGAag-CGGCGGUGUGCGCa -3'
miRNA:   3'- ugAGU-UCCUgugGCUGCCACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 63182 0.7 0.620741
Target:  5'- cGC-CGAGGugAUCGcacccCGGUcGUGCGCCu -3'
miRNA:   3'- -UGaGUUCCugUGGCu----GCCA-CAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 45508 0.7 0.609923
Target:  5'- cGCUgu-GGcCACCGcgcCGGUGUugGCCg -3'
miRNA:   3'- -UGAguuCCuGUGGCu--GCCACAugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.