miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 5' -54.1 NC_005259.1 + 24009 0.73 0.444446
Target:  5'- cACUCGAGGACACC-ACGGggcuggcgaaaUGgaacCGCCg -3'
miRNA:   3'- -UGAGUUCCUGUGGcUGCC-----------ACau--GCGG- -5'
23200 5' -54.1 NC_005259.1 + 29902 0.66 0.854964
Target:  5'- aGCaCAAGGGguggcugcccgagacCAUCGACGcGUGgcCGCCa -3'
miRNA:   3'- -UGaGUUCCU---------------GUGGCUGC-CACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 30294 0.67 0.788351
Target:  5'- aGCUCuacGGugGCCcauuaGACGGcGaGCGCCg -3'
miRNA:   3'- -UGAGuu-CCugUGG-----CUGCCaCaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 30545 0.67 0.807372
Target:  5'- -aUCAuGGcCACCGAgCGGuUGUugACGCCc -3'
miRNA:   3'- ugAGUuCCuGUGGCU-GCC-ACA--UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 30959 0.7 0.653217
Target:  5'- cGC-CGAGcACACCGAUGGUGUA-GCa -3'
miRNA:   3'- -UGaGUUCcUGUGGCUGCCACAUgCGg -5'
23200 5' -54.1 NC_005259.1 + 34732 0.71 0.577614
Target:  5'- -gUCGGGGAaACCGuuGGUgaucGUGCGCCa -3'
miRNA:   3'- ugAGUUCCUgUGGCugCCA----CAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 36362 0.71 0.566921
Target:  5'- aGCUCAAgGGAUugCGucgaaGCGGcgagGUugGCCa -3'
miRNA:   3'- -UGAGUU-CCUGugGC-----UGCCa---CAugCGG- -5'
23200 5' -54.1 NC_005259.1 + 36911 0.66 0.825682
Target:  5'- cACUgaCGGGGAUaucguGCCGACGGUGaguguUGCUg -3'
miRNA:   3'- -UGA--GUUCCUG-----UGGCUGCCACau---GCGG- -5'
23200 5' -54.1 NC_005259.1 + 37269 0.7 0.65754
Target:  5'- gGCUUGAGGcCGCCcggcaggacuugcauGGCGGUGccCGCCg -3'
miRNA:   3'- -UGAGUUCCuGUGG---------------CUGCCACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 38711 0.66 0.846608
Target:  5'- gACUguAGGuugaccaccgcugccGCcguACCGGCGGUGgccCGCCg -3'
miRNA:   3'- -UGAguUCC---------------UG---UGGCUGCCACau-GCGG- -5'
23200 5' -54.1 NC_005259.1 + 39601 0.68 0.758665
Target:  5'- -aUCGuguGGGuggugccauCAgCGACGGUGUACGCg -3'
miRNA:   3'- ugAGU---UCCu--------GUgGCUGCCACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 43653 0.67 0.797945
Target:  5'- -aUCu---GCGCCGACGGUGUcguUGCCg -3'
miRNA:   3'- ugAGuuccUGUGGCUGCCACAu--GCGG- -5'
23200 5' -54.1 NC_005259.1 + 44966 0.67 0.807372
Target:  5'- -gUCAucGGGAUGCCGAgggcCGGUGcgACuGCCg -3'
miRNA:   3'- ugAGU--UCCUGUGGCU----GCCACa-UG-CGG- -5'
23200 5' -54.1 NC_005259.1 + 45508 0.7 0.609923
Target:  5'- cGCUgu-GGcCACCGcgcCGGUGUugGCCg -3'
miRNA:   3'- -UGAguuCCuGUGGCu--GCCACAugCGG- -5'
23200 5' -54.1 NC_005259.1 + 52207 0.68 0.727852
Target:  5'- gGCUCAuGGGCACCG-CGuuccGCGCCc -3'
miRNA:   3'- -UGAGUuCCUGUGGCuGCcacaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 52334 0.66 0.851648
Target:  5'- gGCUC--GGACA-CGcCGGUGUGcCGCUg -3'
miRNA:   3'- -UGAGuuCCUGUgGCuGCCACAU-GCGG- -5'
23200 5' -54.1 NC_005259.1 + 53009 0.7 0.653217
Target:  5'- cCUCGAcuGGGCGCUG-CGGUG-GCGUCg -3'
miRNA:   3'- uGAGUU--CCUGUGGCuGCCACaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56094 0.68 0.747482
Target:  5'- uGCUCGucGGGGcCACCGcguggccaccgaaACuGUGUGCGCUg -3'
miRNA:   3'- -UGAGU--UCCU-GUGGC-------------UGcCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56210 0.74 0.425457
Target:  5'- uGCUCAAGGAU-----CGGUGUAUGCCa -3'
miRNA:   3'- -UGAGUUCCUGuggcuGCCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56652 0.74 0.406961
Target:  5'- aGCaUCGAGGGCACCGcgcgucACGGgcucguUGCGCCa -3'
miRNA:   3'- -UG-AGUUCCUGUGGC------UGCCac----AUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.