Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23203 | 3' | -56.4 | NC_005259.1 | + | 778 | 0.68 | 0.618192 |
Target: 5'- cGC-CGAGGCGGCugcccucGGUUGGGUggccaaGGGGCc -3' miRNA: 3'- -CGaGUUCCGCCG-------CUAGUCCAg-----CUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 1556 | 0.73 | 0.323318 |
Target: 5'- cGUUCGGGGCGGUGAcgcugugagCgcgccccacaccgAGGUCGAGGUc -3' miRNA: 3'- -CGAGUUCCGCCGCUa--------G-------------UCCAGCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 8436 | 0.75 | 0.273481 |
Target: 5'- uGCUCGuugccGGUGGUcucGGUguGGUCGAGGUa -3' miRNA: 3'- -CGAGUu----CCGCCG---CUAguCCAGCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 8649 | 0.66 | 0.746737 |
Target: 5'- gGCaCGAGGCuGUGGUCGGGcugccacgcgggcaaCGGGGCc -3' miRNA: 3'- -CGaGUUCCGcCGCUAGUCCa--------------GCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 16676 | 0.68 | 0.597893 |
Target: 5'- cCUCGAuguGGuCGGCGAUCcuGGGcacCGAGGUg -3' miRNA: 3'- cGAGUU---CC-GCCGCUAG--UCCa--GCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 17171 | 0.69 | 0.555546 |
Target: 5'- aGCUgacgaCAAGGCGGCG--CAGGaagccgcgcgUGAGGCg -3' miRNA: 3'- -CGA-----GUUCCGCCGCuaGUCCa---------GCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 17355 | 0.68 | 0.629968 |
Target: 5'- -gUCGAGGuCGGCGGcUCGgcgcuGGUCGuGGUc -3' miRNA: 3'- cgAGUUCC-GCCGCU-AGU-----CCAGCuCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 17802 | 0.67 | 0.693909 |
Target: 5'- cGCgauagCGAGGcCGGUGAgcUCAG--CGAGGCc -3' miRNA: 3'- -CGa----GUUCC-GCCGCU--AGUCcaGCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 19145 | 0.66 | 0.714877 |
Target: 5'- --gUAAGGCacacacCGAUCAgGGUCGAGGUu -3' miRNA: 3'- cgaGUUCCGcc----GCUAGU-CCAGCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 19205 | 0.67 | 0.662057 |
Target: 5'- aGCUCGuggugcGGGCGGCGAcgUGGGacacCGAgucGGCg -3' miRNA: 3'- -CGAGU------UCCGCCGCUa-GUCCa---GCU---CCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 19646 | 0.66 | 0.713836 |
Target: 5'- cGCUCAccggcaccgccucGGGCaGCcgcuacauccccGGUCAGGUCGggaucgagcAGGCu -3' miRNA: 3'- -CGAGU-------------UCCGcCG------------CUAGUCCAGC---------UCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 23285 | 0.68 | 0.597893 |
Target: 5'- --cCGGGcGCGGUGGUUGGGuaUCGGGGUc -3' miRNA: 3'- cgaGUUC-CGCCGCUAGUCC--AGCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 23348 | 0.67 | 0.651375 |
Target: 5'- gGCUCGAGGCuGCcugCgAGGccgcCGAGGCa -3' miRNA: 3'- -CGAGUUCCGcCGcuaG-UCCa---GCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 25413 | 0.69 | 0.545085 |
Target: 5'- cCUCAaccGGGaCGGCGA---GGUCGAGGa -3' miRNA: 3'- cGAGU---UCC-GCCGCUaguCCAGCUCCg -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 26691 | 0.66 | 0.749769 |
Target: 5'- -aUCGAGGCGGgGAacUCGgGGUUGAuuuccucgaccaucgGGCc -3' miRNA: 3'- cgAGUUCCGCCgCU--AGU-CCAGCU---------------CCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 27139 | 0.67 | 0.651375 |
Target: 5'- uUUgAGGGCGGCug-CGGuGUUGGGGCc -3' miRNA: 3'- cGAgUUCCGCCGcuaGUC-CAGCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 31897 | 0.73 | 0.321783 |
Target: 5'- uCUCAAGGCccGGCGcgagcgccucaAUCucgucacgcacucgGGGUCGAGGCg -3' miRNA: 3'- cGAGUUCCG--CCGC-----------UAG--------------UCCAGCUCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 33309 | 0.67 | 0.683335 |
Target: 5'- gGCUCGAucccgccgucGGCGGUcacgcggaaguGAUCgGGGUCGAuGCa -3' miRNA: 3'- -CGAGUU----------CCGCCG-----------CUAG-UCCAGCUcCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 40037 | 0.7 | 0.518205 |
Target: 5'- uGCuUUGAGGUcgccGGUGAUCGGGUCGgucgcgaugacccauGGGCc -3' miRNA: 3'- -CG-AGUUCCG----CCGCUAGUCCAGC---------------UCCG- -5' |
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23203 | 3' | -56.4 | NC_005259.1 | + | 50430 | 0.73 | 0.331863 |
Target: 5'- gGCUC-GGGCaGCGGUgCGGGcUCGGGGUc -3' miRNA: 3'- -CGAGuUCCGcCGCUA-GUCC-AGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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