miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 3' -56.4 NC_005259.1 + 68874 0.66 0.725251
Target:  5'- cGCgCcGGGCGcGcCGAUgAGGUagaUGAGGCg -3'
miRNA:   3'- -CGaGuUCCGC-C-GCUAgUCCA---GCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 68091 0.7 0.462272
Target:  5'- aGCUCGAuGGcCGGgGuaacgacguaguUCGGGUCGAGaGCa -3'
miRNA:   3'- -CGAGUU-CC-GCCgCu-----------AGUCCAGCUC-CG- -5'
23203 3' -56.4 NC_005259.1 + 62690 0.72 0.398902
Target:  5'- cCUCGAGuGCggugucccauccGGCGAUCAGG-CGGGGg -3'
miRNA:   3'- cGAGUUC-CG------------CCGCUAGUCCaGCUCCg -5'
23203 3' -56.4 NC_005259.1 + 61027 0.7 0.493872
Target:  5'- aCUCGGuGGCGGCGA---GGUCGAccgacgGGCg -3'
miRNA:   3'- cGAGUU-CCGCCGCUaguCCAGCU------CCG- -5'
23203 3' -56.4 NC_005259.1 + 60338 1.13 0.000594
Target:  5'- cGCUCAAGGCGGCGAUCAGGUCGAGGCc -3'
miRNA:   3'- -CGAGUUCCGCCGCUAGUCCAGCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 58912 0.66 0.725251
Target:  5'- gGCUCGu--CGGCGGUCuuGUCGucGGCg -3'
miRNA:   3'- -CGAGUuccGCCGCUAGucCAGCu-CCG- -5'
23203 3' -56.4 NC_005259.1 + 58772 0.71 0.426181
Target:  5'- cGCUgcGGGCGcuGUGcgCcGGUCGAGGCg -3'
miRNA:   3'- -CGAguUCCGC--CGCuaGuCCAGCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 58404 0.67 0.683335
Target:  5'- aGC-CAccGGCGGCGAUCAGaGaUCcaccGGGCa -3'
miRNA:   3'- -CGaGUu-CCGCCGCUAGUC-C-AGc---UCCG- -5'
23203 3' -56.4 NC_005259.1 + 58329 0.73 0.339773
Target:  5'- uCUC-GGGCaGCGAgaUCAGGUCGGuGGCc -3'
miRNA:   3'- cGAGuUCCGcCGCU--AGUCCAGCU-CCG- -5'
23203 3' -56.4 NC_005259.1 + 54680 0.71 0.444971
Target:  5'- uGCUC--GGCGaGCGAgacCGuGUCGAGGCg -3'
miRNA:   3'- -CGAGuuCCGC-CGCUa--GUcCAGCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 54502 0.71 0.40787
Target:  5'- gGCgggCAuGGCGGCGAUgugggguggCGGGUCGAguauccGGCc -3'
miRNA:   3'- -CGa--GUuCCGCCGCUA---------GUCCAGCU------CCG- -5'
23203 3' -56.4 NC_005259.1 + 53009 0.7 0.493872
Target:  5'- cCUCGacuGGGCGcuGCGGUgGcGUCGAGGCa -3'
miRNA:   3'- cGAGU---UCCGC--CGCUAgUcCAGCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 51263 0.67 0.683335
Target:  5'- gGCUC---GCGGUGGUCAcGGUgCGcGGCa -3'
miRNA:   3'- -CGAGuucCGCCGCUAGU-CCA-GCuCCG- -5'
23203 3' -56.4 NC_005259.1 + 51139 0.69 0.534689
Target:  5'- -gUCGGGGCGGCcauGAgcgcguUCGGGUUGAccguGGCg -3'
miRNA:   3'- cgAGUUCCGCCG---CU------AGUCCAGCU----CCG- -5'
23203 3' -56.4 NC_005259.1 + 50430 0.73 0.331863
Target:  5'- gGCUC-GGGCaGCGGUgCGGGcUCGGGGUc -3'
miRNA:   3'- -CGAGuUCCGcCGCUA-GUCC-AGCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 40037 0.7 0.518205
Target:  5'- uGCuUUGAGGUcgccGGUGAUCGGGUCGgucgcgaugacccauGGGCc -3'
miRNA:   3'- -CG-AGUUCCG----CCGCUAGUCCAGC---------------UCCG- -5'
23203 3' -56.4 NC_005259.1 + 33309 0.67 0.683335
Target:  5'- gGCUCGAucccgccgucGGCGGUcacgcggaaguGAUCgGGGUCGAuGCa -3'
miRNA:   3'- -CGAGUU----------CCGCCG-----------CUAG-UCCAGCUcCG- -5'
23203 3' -56.4 NC_005259.1 + 31897 0.73 0.321783
Target:  5'- uCUCAAGGCccGGCGcgagcgccucaAUCucgucacgcacucgGGGUCGAGGCg -3'
miRNA:   3'- cGAGUUCCG--CCGC-----------UAG--------------UCCAGCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 27139 0.67 0.651375
Target:  5'- uUUgAGGGCGGCug-CGGuGUUGGGGCc -3'
miRNA:   3'- cGAgUUCCGCCGcuaGUC-CAGCUCCG- -5'
23203 3' -56.4 NC_005259.1 + 26691 0.66 0.749769
Target:  5'- -aUCGAGGCGGgGAacUCGgGGUUGAuuuccucgaccaucgGGCc -3'
miRNA:   3'- cgAGUUCCGCCgCU--AGU-CCAGCU---------------CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.