Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23206 | 3' | -58.5 | NC_005259.1 | + | 43980 | 0.66 | 0.649012 |
Target: 5'- cCGAg---GGCGGUGC-CGAUGGACgCu -3' miRNA: 3'- -GCUaccaCCGCCACGcGCUGUCUGgG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 3101 | 0.66 | 0.632205 |
Target: 5'- gCGAUGaGcgGGCGGccauUGCGCGGCAccgugggcagcggacGGCaCCg -3' miRNA: 3'- -GCUAC-Ca-CCGCC----ACGCGCUGU---------------CUG-GG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 33879 | 0.66 | 0.616447 |
Target: 5'- ---cGGUGagcacacGCGGgaaccacccGCGCGACGGGCCg -3' miRNA: 3'- gcuaCCAC-------CGCCa--------CGCGCUGUCUGGg -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 10230 | 0.66 | 0.611199 |
Target: 5'- aGAUGGcgcucacugagcacGGCGGUGUGCuugaugaGCGGGCCg -3' miRNA: 3'- gCUACCa-------------CCGCCACGCGc------UGUCUGGg -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 66660 | 0.66 | 0.607004 |
Target: 5'- ---cGGUcGGCGGUGCuGCGAU--GCUCa -3' miRNA: 3'- gcuaCCA-CCGCCACG-CGCUGucUGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 19209 | 0.67 | 0.596531 |
Target: 5'- -cGUGGUG-CGGgcgGCGaCGugGGACaCCg -3' miRNA: 3'- gcUACCACcGCCa--CGC-GCugUCUG-GG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 35308 | 0.67 | 0.586085 |
Target: 5'- aGAUGaccgagGGCGGUGUGU-ACGcGACCCc -3' miRNA: 3'- gCUACca----CCGCCACGCGcUGU-CUGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 61594 | 0.67 | 0.575675 |
Target: 5'- gCGGUGGgccGGUGGggucgGCGgGgaacaGCAGACCg -3' miRNA: 3'- -GCUACCa--CCGCCa----CGCgC-----UGUCUGGg -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 4513 | 0.67 | 0.554988 |
Target: 5'- cCGGgaGUGGCGcUGCGCGGCAc-CCCg -3' miRNA: 3'- -GCUacCACCGCcACGCGCUGUcuGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 47945 | 0.68 | 0.514334 |
Target: 5'- cCGAUGacGGCGGUGC-CGAUGGccgccgcgccGCCCg -3' miRNA: 3'- -GCUACcaCCGCCACGcGCUGUC----------UGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 27383 | 0.68 | 0.514334 |
Target: 5'- aCGGUgaccGGcGGCGGUGUcggcagcgGCGGCAGcucgguGCCCg -3' miRNA: 3'- -GCUA----CCaCCGCCACG--------CGCUGUC------UGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 68693 | 0.68 | 0.504354 |
Target: 5'- uCGAUGaucgaGGCGGgcaGCGCGuCGGugCCc -3' miRNA: 3'- -GCUACca---CCGCCa--CGCGCuGUCugGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 24297 | 0.69 | 0.474945 |
Target: 5'- gGAUGGUGcUGcUGCGCGAUcuACCCg -3' miRNA: 3'- gCUACCACcGCcACGCGCUGucUGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 46438 | 0.69 | 0.455821 |
Target: 5'- aCGAUGGUGGCaagcugcugcucGGUGagGCu-CAGAUCCu -3' miRNA: 3'- -GCUACCACCG------------CCACg-CGcuGUCUGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 50505 | 0.69 | 0.455821 |
Target: 5'- uCGAUGuG-GGCGGUGCGCuGCAccucGACgCg -3' miRNA: 3'- -GCUAC-CaCCGCCACGCGcUGU----CUGgG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 26637 | 0.69 | 0.455821 |
Target: 5'- uCGAUGGccUGGC-GUGCGCucGGCAGguucggcgcACCCg -3' miRNA: 3'- -GCUACC--ACCGcCACGCG--CUGUC---------UGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 6384 | 0.69 | 0.440825 |
Target: 5'- gCGAUGGUcaacgucauuuucgaGGCGGUGCcCuGAUGuGGCCCg -3' miRNA: 3'- -GCUACCA---------------CCGCCACGcG-CUGU-CUGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 41119 | 0.69 | 0.427937 |
Target: 5'- aCGAUGucGGCGGUGCccGCGucgcgcagccuCAGGCCCc -3' miRNA: 3'- -GCUACcaCCGCCACG--CGCu----------GUCUGGG- -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 31526 | 0.69 | 0.427937 |
Target: 5'- uGAUcGG-GGUGGUGcCGUGAUAGAUCg -3' miRNA: 3'- gCUA-CCaCCGCCAC-GCGCUGUCUGGg -5' |
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23206 | 3' | -58.5 | NC_005259.1 | + | 15568 | 0.71 | 0.342778 |
Target: 5'- ---aGGUGGCcacccucgGGgccaGCGCGACGGGCCg -3' miRNA: 3'- gcuaCCACCG--------CCa---CGCGCUGUCUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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