Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23206 | 5' | -56.2 | NC_005259.1 | + | 35938 | 0.66 | 0.745251 |
Target: 5'- uUGGAUGUUGGUgguguuggugaaCGUGACCguGGUcGCUg -3' miRNA: 3'- uGCCUACAACCA------------GCGCUGG--UCA-CGGu -5' |
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23206 | 5' | -56.2 | NC_005259.1 | + | 11406 | 0.66 | 0.745251 |
Target: 5'- aGCGGuuuc-GGcUCGUGGCCGGUGCa- -3' miRNA: 3'- -UGCCuacaaCC-AGCGCUGGUCACGgu -5' |
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23206 | 5' | -56.2 | NC_005259.1 | + | 11435 | 0.66 | 0.692968 |
Target: 5'- -gGGAUGcUUGGgccgcUCGCugccGCCGGUGCCu -3' miRNA: 3'- ugCCUAC-AACC-----AGCGc---UGGUCACGGu -5' |
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23206 | 5' | -56.2 | NC_005259.1 | + | 58565 | 0.67 | 0.650057 |
Target: 5'- -gGGcgGUUGGgccggaUCGCGGCgCGGcUGCCGg -3' miRNA: 3'- ugCCuaCAACC------AGCGCUG-GUC-ACGGU- -5' |
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23206 | 5' | -56.2 | NC_005259.1 | + | 25850 | 0.69 | 0.532443 |
Target: 5'- cGCGGAUG-UGGUacucgaugUGCgGGCguGUGCCAg -3' miRNA: 3'- -UGCCUACaACCA--------GCG-CUGguCACGGU- -5' |
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23206 | 5' | -56.2 | NC_005259.1 | + | 57912 | 1.08 | 0.001157 |
Target: 5'- gACGGAUGUUGGUCGCGACCAGUGCCAg -3' miRNA: 3'- -UGCCUACAACCAGCGCUGGUCACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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