miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23207 3' -57.7 NC_005259.1 + 43235 0.66 0.652025
Target:  5'- uGAUGa-GCGAGCUGaCGAuGCcGCCcGCg -3'
miRNA:   3'- gCUACaaCGCUCGGC-GCU-CG-CGGaCG- -5'
23207 3' -57.7 NC_005259.1 + 45524 0.66 0.620048
Target:  5'- cCGGUGUUGgccgcCGuGGCUGCGAGCgGgUUGCu -3'
miRNA:   3'- -GCUACAAC-----GC-UCGGCGCUCG-CgGACG- -5'
23207 3' -57.7 NC_005259.1 + 45964 0.68 0.546158
Target:  5'- cCGAcGUUGcCGAGCUugGCGAGUGUguccgcguacauCUGCg -3'
miRNA:   3'- -GCUaCAAC-GCUCGG--CGCUCGCG------------GACG- -5'
23207 3' -57.7 NC_005259.1 + 47055 0.68 0.515295
Target:  5'- gCGAgcgUGUUgGUGAGCgagGCGAGCGCCgagacgauggGCa -3'
miRNA:   3'- -GCU---ACAA-CGCUCGg--CGCUCGCGGa---------CG- -5'
23207 3' -57.7 NC_005259.1 + 47843 0.67 0.556581
Target:  5'- uGAcGgUGCGAGCUuuuCGAGCGCCuUGUu -3'
miRNA:   3'- gCUaCaACGCUCGGc--GCUCGCGG-ACG- -5'
23207 3' -57.7 NC_005259.1 + 49418 0.7 0.418408
Target:  5'- uCGAUGccaGCGAGaaaCCgGCGAGCGCC-GCc -3'
miRNA:   3'- -GCUACaa-CGCUC---GG-CGCUCGCGGaCG- -5'
23207 3' -57.7 NC_005259.1 + 49651 0.69 0.485161
Target:  5'- gCGAUG--GCG-GCCuCGAuacGCGCCUGCu -3'
miRNA:   3'- -GCUACaaCGCuCGGcGCU---CGCGGACG- -5'
23207 3' -57.7 NC_005259.1 + 51764 0.68 0.505161
Target:  5'- ---cGUUGCGcuCgGCGAGCGCCUu- -3'
miRNA:   3'- gcuaCAACGCucGgCGCUCGCGGAcg -5'
23207 3' -57.7 NC_005259.1 + 55708 0.67 0.556581
Target:  5'- ---cGUUGauGGCCGCGAGCaCCUcGCc -3'
miRNA:   3'- gcuaCAACgcUCGGCGCUCGcGGA-CG- -5'
23207 3' -57.7 NC_005259.1 + 55750 0.68 0.535799
Target:  5'- uGGUGUcgagaccgUGCGcAGCCGCGuacGCGUCgaGCu -3'
miRNA:   3'- gCUACA--------ACGC-UCGGCGCu--CGCGGa-CG- -5'
23207 3' -57.7 NC_005259.1 + 56405 0.67 0.556581
Target:  5'- uCGAUGgUGCccggcccgccGAGCUcaagcagagcaGCGAGCGCCggGCc -3'
miRNA:   3'- -GCUACaACG----------CUCGG-----------CGCUCGCGGa-CG- -5'
23207 3' -57.7 NC_005259.1 + 57753 1.11 0.000547
Target:  5'- gCGAUGUUGCGAGCCGCGAGCGCCUGCu -3'
miRNA:   3'- -GCUACAACGCUCGGCGCUCGCGGACG- -5'
23207 3' -57.7 NC_005259.1 + 58586 0.7 0.418408
Target:  5'- gCGcgGcUGcCGGGCCGgaucuuuuCGAGCGCCUGg -3'
miRNA:   3'- -GCuaCaAC-GCUCGGC--------GCUCGCGGACg -5'
23207 3' -57.7 NC_005259.1 + 58754 0.69 0.475303
Target:  5'- gCGAaGUUcgGCGAacgacGCUGCGGGCGCUgUGCg -3'
miRNA:   3'- -GCUaCAA--CGCU-----CGGCGCUCGCGG-ACG- -5'
23207 3' -57.7 NC_005259.1 + 65332 0.66 0.652025
Target:  5'- uCGAUGU--CGAGCUGCuGuGCGCggGCa -3'
miRNA:   3'- -GCUACAacGCUCGGCG-CuCGCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.