miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23208 5' -55.9 NC_005259.1 + 2425 0.68 0.639973
Target:  5'- cUUGUCaGGGCGGGACg--GU-CCCGCCg -3'
miRNA:   3'- -AGUAG-CUCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 67250 0.68 0.650718
Target:  5'- -gGUUGAGCGGGGCCucgggcagccGUGUCgCGUCa -3'
miRNA:   3'- agUAGCUCGCCUUGGua--------CACGG-GCGG- -5'
23208 5' -55.9 NC_005259.1 + 56078 0.67 0.672152
Target:  5'- cCGUCGAGCaG-AUCG-GUGCUCGUCg -3'
miRNA:   3'- aGUAGCUCGcCuUGGUaCACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 3116 0.67 0.672152
Target:  5'- cCAUUGcGCGGcACCGUGggcagcggacgGCaCCGCCc -3'
miRNA:   3'- aGUAGCuCGCCuUGGUACa----------CG-GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 62377 0.67 0.672152
Target:  5'- cUCAUCGAGUagcaGAuCCAaaccGCCCGCCu -3'
miRNA:   3'- -AGUAGCUCGc---CUuGGUaca-CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 43721 0.67 0.672152
Target:  5'- gCAUCGAGUcgauGGcGGCCAUGccGCCgaGCCg -3'
miRNA:   3'- aGUAGCUCG----CC-UUGGUACa-CGGg-CGG- -5'
23208 5' -55.9 NC_005259.1 + 6396 0.67 0.682819
Target:  5'- gUCAuuuUCGAGgCGGuGCCcugAUGUgGCCCGaCCu -3'
miRNA:   3'- -AGU---AGCUC-GCCuUGG---UACA-CGGGC-GG- -5'
23208 5' -55.9 NC_005259.1 + 2099 0.67 0.69344
Target:  5'- uUCAUCG-GCGaGGCCAauUGgcacacGCUCGCCg -3'
miRNA:   3'- -AGUAGCuCGCcUUGGU--ACa-----CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 34870 0.67 0.69344
Target:  5'- cUCGUCGGuGCcGGACCGggGUGCCUcgggcaggacggGCCg -3'
miRNA:   3'- -AGUAGCU-CGcCUUGGUa-CACGGG------------CGG- -5'
23208 5' -55.9 NC_005259.1 + 393 0.67 0.69344
Target:  5'- uUCAagaCGGGCGaauACCAgcagcgcGUGCCCGUCg -3'
miRNA:   3'- -AGUa--GCUCGCcu-UGGUa------CACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 46918 0.67 0.704005
Target:  5'- gUCcgCGuGCGccGCCGaGcuUGCCCGCCg -3'
miRNA:   3'- -AGuaGCuCGCcuUGGUaC--ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 23613 0.67 0.704005
Target:  5'- cCcgCGuGGCGGcAGCCAgacggcucggugUGguuucgGCCCGCCg -3'
miRNA:   3'- aGuaGC-UCGCC-UUGGU------------ACa-----CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 54682 0.67 0.714503
Target:  5'- cUCggCGAGCGaGACCGUGUcgaggcgggugGCCUcaGCCu -3'
miRNA:   3'- -AGuaGCUCGCcUUGGUACA-----------CGGG--CGG- -5'
23208 5' -55.9 NC_005259.1 + 65889 0.67 0.714503
Target:  5'- -aAUCG-GCGGGACg--GU-CCCGCCg -3'
miRNA:   3'- agUAGCuCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 50702 0.67 0.714503
Target:  5'- cUCGUCGucGCGcuuGAGCCggGUGCUgGCUu -3'
miRNA:   3'- -AGUAGCu-CGC---CUUGGuaCACGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 13671 0.66 0.724923
Target:  5'- aCAUCGAcggugugcucGUGGAcCCGUG-GCCgGUCg -3'
miRNA:   3'- aGUAGCU----------CGCCUuGGUACaCGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 30353 0.66 0.724923
Target:  5'- cUCAcCGuGUGGAcGCCGaucUGCCCGCUg -3'
miRNA:   3'- -AGUaGCuCGCCU-UGGUac-ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 45545 0.66 0.735255
Target:  5'- ---gCGAGCGGGuugcucgccggGCCAcccuUGCCCGCg -3'
miRNA:   3'- aguaGCUCGCCU-----------UGGUac--ACGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 6657 0.66 0.735255
Target:  5'- -gGUCGAG-GGuguCCGUGacgcgcgagcUGCCCGCUu -3'
miRNA:   3'- agUAGCUCgCCuu-GGUAC----------ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 33735 0.66 0.752587
Target:  5'- -uGUCGcGUGGAGCgGUGUGCacgagcacgaacacCCGCa -3'
miRNA:   3'- agUAGCuCGCCUUGgUACACG--------------GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.