miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23208 5' -55.9 NC_005259.1 + 33735 0.66 0.752587
Target:  5'- -uGUCGcGUGGAGCgGUGUGCacgagcacgaacacCCGCa -3'
miRNA:   3'- agUAGCuCGCCUUGgUACACG--------------GGCGg -5'
23208 5' -55.9 NC_005259.1 + 34870 0.67 0.69344
Target:  5'- cUCGUCGGuGCcGGACCGggGUGCCUcgggcaggacggGCCg -3'
miRNA:   3'- -AGUAGCU-CGcCUUGGUa-CACGGG------------CGG- -5'
23208 5' -55.9 NC_005259.1 + 36317 0.74 0.292051
Target:  5'- ---gCGGGCGGGAUCAUGUuggcaaacgaaauGCCCGCg -3'
miRNA:   3'- aguaGCUCGCCUUGGUACA-------------CGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 37606 0.68 0.608804
Target:  5'- aCGUCGGGCcgagcucgcugaugGGGAUgAUGUGCugcccgaugaccgcaCCGCCg -3'
miRNA:   3'- aGUAGCUCG--------------CCUUGgUACACG---------------GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 37846 0.68 0.61847
Target:  5'- gCGUCGAGCcGAugUAgaccuUGCCCGCg -3'
miRNA:   3'- aGUAGCUCGcCUugGUac---ACGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 40124 0.69 0.542957
Target:  5'- cUCGUgGAauugGCGGGcgagcucGCCGUcgguugucgGUGCCCGCCc -3'
miRNA:   3'- -AGUAgCU----CGCCU-------UGGUA---------CACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 43721 0.67 0.672152
Target:  5'- gCAUCGAGUcgauGGcGGCCAUGccGCCgaGCCg -3'
miRNA:   3'- aGUAGCUCG----CC-UUGGUACa-CGGg-CGG- -5'
23208 5' -55.9 NC_005259.1 + 43950 0.66 0.775488
Target:  5'- gCGUCGgcgaugGGCGGGGCCGcc-GCCUGaCCg -3'
miRNA:   3'- aGUAGC------UCGCCUUGGUacaCGGGC-GG- -5'
23208 5' -55.9 NC_005259.1 + 45090 0.68 0.639973
Target:  5'- -uGUCGAGCGugcCCGUGUaGCCgGUCg -3'
miRNA:   3'- agUAGCUCGCcuuGGUACA-CGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 45545 0.66 0.735255
Target:  5'- ---gCGAGCGGGuugcucgccggGCCAcccuUGCCCGCg -3'
miRNA:   3'- aguaGCUCGCCU-----------UGGUac--ACGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 46918 0.67 0.704005
Target:  5'- gUCcgCGuGCGccGCCGaGcuUGCCCGCCg -3'
miRNA:   3'- -AGuaGCuCGCcuUGGUaC--ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 48598 0.71 0.482605
Target:  5'- cUUGUCGAGCGcGGgcgcuaccGCCGUGcgcacUGCCuCGCCg -3'
miRNA:   3'- -AGUAGCUCGC-CU--------UGGUAC-----ACGG-GCGG- -5'
23208 5' -55.9 NC_005259.1 + 49084 0.71 0.443583
Target:  5'- aUCGcUCGAG-GGugUCAUGgccGCCCGCCg -3'
miRNA:   3'- -AGU-AGCUCgCCuuGGUACa--CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 50276 0.66 0.755612
Target:  5'- gUCGUCGguGGCGGGAacgUCGUGcacGCuCUGCCa -3'
miRNA:   3'- -AGUAGC--UCGCCUU---GGUACa--CG-GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 50702 0.67 0.714503
Target:  5'- cUCGUCGucGCGcuuGAGCCggGUGCUgGCUu -3'
miRNA:   3'- -AGUAGCu-CGC---CUUGGuaCACGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 51938 0.66 0.765616
Target:  5'- cUUGUCaGGCGGGACa--GU-CCCGCCg -3'
miRNA:   3'- -AGUAGcUCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 53624 0.75 0.271896
Target:  5'- gCGUCGAGCGGuGCCGU-UGgCCGCUu -3'
miRNA:   3'- aGUAGCUCGCCuUGGUAcACgGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 54682 0.67 0.714503
Target:  5'- cUCggCGAGCGaGACCGUGUcgaggcgggugGCCUcaGCCu -3'
miRNA:   3'- -AGuaGCUCGCcUUGGUACA-----------CGGG--CGG- -5'
23208 5' -55.9 NC_005259.1 + 56078 0.67 0.672152
Target:  5'- cCGUCGAGCaG-AUCG-GUGCUCGUCg -3'
miRNA:   3'- aGUAGCUCGcCuUGGUaCACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 57130 0.68 0.62922
Target:  5'- cCAUCG-GCGGGACCgagcaguaGUG-GCCCucccacguGCCg -3'
miRNA:   3'- aGUAGCuCGCCUUGG--------UACaCGGG--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.