miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 17728 0.66 0.889904
Target:  5'- cCGACG-CACCgUGGCUG-CUCGaCGCg -3'
miRNA:   3'- -GUUGCaGUGGaACUGGCuGAGUgGCG- -5'
23209 3' -52.7 NC_005259.1 + 45335 0.66 0.896992
Target:  5'- -uGCGUgGCCUgcGCCGcCUgggcCGCCGCg -3'
miRNA:   3'- guUGCAgUGGAacUGGCuGA----GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47895 0.66 0.896992
Target:  5'- uCAGCGUCggcucguugagcGCCUUGAU-GGCgUCGCCGa -3'
miRNA:   3'- -GUUGCAG------------UGGAACUGgCUG-AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 62617 0.66 0.896992
Target:  5'- uGACGccgCACCgUGGCCag--CACCGCa -3'
miRNA:   3'- gUUGCa--GUGGaACUGGcugaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47486 0.66 0.896992
Target:  5'- -cGCGUCACCgaGGCgCGGCaggaacaCGCUGCc -3'
miRNA:   3'- guUGCAGUGGaaCUG-GCUGa------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 6391 0.66 0.899754
Target:  5'- uCAACGUCAuuuucgaggcggugcCCUgaugUGGcCCGAcCUCGCCGa -3'
miRNA:   3'- -GUUGCAGU---------------GGA----ACU-GGCU-GAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 21520 0.66 0.901797
Target:  5'- uCAACGcCugCUguagcggcgaggacUG-CCGACUCagagACCGCg -3'
miRNA:   3'- -GUUGCaGugGA--------------ACuGGCUGAG----UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 15289 0.66 0.903817
Target:  5'- aAGCGaucuaCACC---GCCGAcCUCGCCGCc -3'
miRNA:   3'- gUUGCa----GUGGaacUGGCU-GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 58948 0.67 0.8507
Target:  5'- gCAGCGUCgGCCUUGGCCaGcaggucgggcaGCUCGuCgGCg -3'
miRNA:   3'- -GUUGCAG-UGGAACUGG-C-----------UGAGU-GgCG- -5'
23209 3' -52.7 NC_005259.1 + 22524 0.67 0.859022
Target:  5'- gCAcCGUCGCCggUGAuuuccagcaguCCGAcCUCGCCGa -3'
miRNA:   3'- -GUuGCAGUGGa-ACU-----------GGCU-GAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 7638 0.67 0.859022
Target:  5'- aCAcCGUCGCCgaGuuCGAC-CGCCGUc -3'
miRNA:   3'- -GUuGCAGUGGaaCugGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 62125 0.67 0.842152
Target:  5'- ---aGUCACCgaggUGAUCGuCUCgaccaccucagGCCGCa -3'
miRNA:   3'- guugCAGUGGa---ACUGGCuGAG-----------UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 52568 0.67 0.841285
Target:  5'- aCAugGUCgACCg-GACCGGCcugagcgUCGCCGa -3'
miRNA:   3'- -GUugCAG-UGGaaCUGGCUG-------AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 9587 0.67 0.867111
Target:  5'- uCAACGUCGUCggucUGGCCGuagagCACCGUg -3'
miRNA:   3'- -GUUGCAGUGGa---ACUGGCuga--GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 44405 0.67 0.874185
Target:  5'- -cACGUCggugcccGCC-UGACCGGCagCGCCGa -3'
miRNA:   3'- guUGCAG-------UGGaACUGGCUGa-GUGGCg -5'
23209 3' -52.7 NC_005259.1 + 63850 0.67 0.874958
Target:  5'- aAGCGcgUACCggcgaggUGGCCGGCUgGCCuuGCg -3'
miRNA:   3'- gUUGCa-GUGGa------ACUGGCUGAgUGG--CG- -5'
23209 3' -52.7 NC_005259.1 + 53218 0.67 0.859022
Target:  5'- -cGCGUCGCCcgcgcccugcUUGagguucgcgccGCCGACaccgUCGCCGCc -3'
miRNA:   3'- guUGCAGUGG----------AAC-----------UGGCUG----AGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 53737 0.68 0.833386
Target:  5'- uGAUGUCGCCgggUGuCC-ACUCgguGCCGCc -3'
miRNA:   3'- gUUGCAGUGGa--ACuGGcUGAG---UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 27251 0.68 0.833386
Target:  5'- uCGAgGUgACCcgcguagGACCGAUaCGCCGCc -3'
miRNA:   3'- -GUUgCAgUGGaa-----CUGGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 6462 0.68 0.824411
Target:  5'- gCAGCGUCGCCggugcccUGuACCcGCUCAC-GCg -3'
miRNA:   3'- -GUUGCAGUGGa------AC-UGGcUGAGUGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.