Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23209 | 3' | -52.7 | NC_005259.1 | + | 17728 | 0.66 | 0.889904 |
Target: 5'- cCGACG-CACCgUGGCUG-CUCGaCGCg -3' miRNA: 3'- -GUUGCaGUGGaACUGGCuGAGUgGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 19643 | 0.66 | 0.910374 |
Target: 5'- aGACGcUCACCggcACCGcCUCgggcaGCCGCu -3' miRNA: 3'- gUUGC-AGUGGaacUGGCuGAG-----UGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 20245 | 0.69 | 0.776746 |
Target: 5'- --cCG-CACCcUGugCGACaCGCCGCg -3' miRNA: 3'- guuGCaGUGGaACugGCUGaGUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 20611 | 0.69 | 0.756572 |
Target: 5'- gCGGCG-CACCgcGACCGugUCGauGCg -3' miRNA: 3'- -GUUGCaGUGGaaCUGGCugAGUggCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 21520 | 0.66 | 0.901797 |
Target: 5'- uCAACGcCugCUguagcggcgaggacUG-CCGACUCagagACCGCg -3' miRNA: 3'- -GUUGCaGugGA--------------ACuGGCUGAG----UGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 22524 | 0.67 | 0.859022 |
Target: 5'- gCAcCGUCGCCggUGAuuuccagcaguCCGAcCUCGCCGa -3' miRNA: 3'- -GUuGCAGUGGa-ACU-----------GGCU-GAGUGGCg -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 22701 | 0.66 | 0.910374 |
Target: 5'- --cCGUCGCCgucACCGGCUCGaugagcuaCGCc -3' miRNA: 3'- guuGCAGUGGaacUGGCUGAGUg-------GCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 24222 | 0.66 | 0.910374 |
Target: 5'- aCAACGUgACCggcggGGCCGAggCAC-GCg -3' miRNA: 3'- -GUUGCAgUGGaa---CUGGCUgaGUGgCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 26044 | 0.66 | 0.903817 |
Target: 5'- gCAGCGcCGCCggguUGGCCauGC-CGCCGCc -3' miRNA: 3'- -GUUGCaGUGGa---ACUGGc-UGaGUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 27251 | 0.68 | 0.833386 |
Target: 5'- uCGAgGUgACCcgcguagGACCGAUaCGCCGCc -3' miRNA: 3'- -GUUgCAgUGGaa-----CUGGCUGaGUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 29454 | 0.76 | 0.401283 |
Target: 5'- cCAGCGUgACCUUGccgcCCGGCUCggcauggACCGCc -3' miRNA: 3'- -GUUGCAgUGGAACu---GGCUGAG-------UGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 30001 | 0.69 | 0.776746 |
Target: 5'- gGugGUCACCacGACaagguGAC-CACCGCc -3' miRNA: 3'- gUugCAGUGGaaCUGg----CUGaGUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 30326 | 0.66 | 0.903817 |
Target: 5'- -cGCGUCguACC-UGACaCGcagcacgaGCUCACCGUg -3' miRNA: 3'- guUGCAG--UGGaACUG-GC--------UGAGUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 30706 | 0.69 | 0.746292 |
Target: 5'- gAGCGUguUgUUGccGCCGACgCGCCGCa -3' miRNA: 3'- gUUGCAguGgAAC--UGGCUGaGUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 31123 | 0.68 | 0.833386 |
Target: 5'- cCGAUGUCGCCgaUGAUCGGgaUGCUGCc -3' miRNA: 3'- -GUUGCAGUGGa-ACUGGCUgaGUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 31803 | 0.73 | 0.552205 |
Target: 5'- --uCGUCAUCgagcucGACCGACccCACCGCg -3' miRNA: 3'- guuGCAGUGGaa----CUGGCUGa-GUGGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 32872 | 0.72 | 0.5737 |
Target: 5'- uCGACGcgCGCggUGAUCGAUUCACCGg -3' miRNA: 3'- -GUUGCa-GUGgaACUGGCUGAGUGGCg -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 33698 | 0.69 | 0.776746 |
Target: 5'- uCAugGaUCACCacggugGACgGAUUCugCGCg -3' miRNA: 3'- -GUugC-AGUGGaa----CUGgCUGAGugGCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 33906 | 0.66 | 0.910374 |
Target: 5'- gCGACGg-GCCgaGACCGGC-CACgGUg -3' miRNA: 3'- -GUUGCagUGGaaCUGGCUGaGUGgCG- -5' |
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23209 | 3' | -52.7 | NC_005259.1 | + | 34509 | 0.69 | 0.772756 |
Target: 5'- aCGAUGUCGCCgacauugcgcacGACUGAC-CACCGa -3' miRNA: 3'- -GUUGCAGUGGaa----------CUGGCUGaGUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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