miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 35542 0.66 0.910374
Target:  5'- --cCGUCGCCgauccGCCcgauGACUUGCCGCc -3'
miRNA:   3'- guuGCAGUGGaac--UGG----CUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 36216 0.66 0.889904
Target:  5'- aCAGCGcgaugccgagCACCUUGGCCaGCgcgagCGCCuGCg -3'
miRNA:   3'- -GUUGCa---------GUGGAACUGGcUGa----GUGG-CG- -5'
23209 3' -52.7 NC_005259.1 + 36437 0.71 0.640139
Target:  5'- gCAGCGUCGCCgaGGUCGACcgcgucgagggugagCACCGCc -3'
miRNA:   3'- -GUUGCAGUGGaaCUGGCUGa--------------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 37032 0.66 0.882558
Target:  5'- aCAAUGUCgAUCUUGguGCCcGC-CACCGCc -3'
miRNA:   3'- -GUUGCAG-UGGAAC--UGGcUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 40247 0.71 0.643417
Target:  5'- uCGAUGUCGuCCUccacagugcccauagUGACaCGAacaCUCACCGCg -3'
miRNA:   3'- -GUUGCAGU-GGA---------------ACUG-GCU---GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 40671 0.66 0.916663
Target:  5'- gCAGCGcgagCGCCUUGGu--GCUCACCGg -3'
miRNA:   3'- -GUUGCa---GUGGAACUggcUGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 43882 0.66 0.889904
Target:  5'- gCAGCGUUGCC---GCCGACaUUGcCCGCg -3'
miRNA:   3'- -GUUGCAGUGGaacUGGCUG-AGU-GGCG- -5'
23209 3' -52.7 NC_005259.1 + 44405 0.67 0.874185
Target:  5'- -cACGUCggugcccGCC-UGACCGGCagCGCCGa -3'
miRNA:   3'- guUGCAG-------UGGaACUGGCUGa-GUGGCg -5'
23209 3' -52.7 NC_005259.1 + 44616 0.74 0.493518
Target:  5'- uUAGCGUugccgccguagguugCGCCUUGACCGguGC-CGCCGCc -3'
miRNA:   3'- -GUUGCA---------------GUGGAACUGGC--UGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 45335 0.66 0.896992
Target:  5'- -uGCGUgGCCUgcGCCGcCUgggcCGCCGCg -3'
miRNA:   3'- guUGCAgUGGAacUGGCuGA----GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47275 0.66 0.889904
Target:  5'- cCAGCG-CACCgagcaGACCGcCgUCGCCGg -3'
miRNA:   3'- -GUUGCaGUGGaa---CUGGCuG-AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 47486 0.66 0.896992
Target:  5'- -cGCGUCACCgaGGCgCGGCaggaacaCGCUGCc -3'
miRNA:   3'- guUGCAGUGGaaCUG-GCUGa------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 47895 0.66 0.896992
Target:  5'- uCAGCGUCggcucguugagcGCCUUGAU-GGCgUCGCCGa -3'
miRNA:   3'- -GUUGCAG------------UGGAACUGgCUG-AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 48401 0.66 0.903817
Target:  5'- cCGACGccCGCCg---UCGAgUCACCGCg -3'
miRNA:   3'- -GUUGCa-GUGGaacuGGCUgAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 48497 0.72 0.584522
Target:  5'- uCGACG-CGCUUgagGGCCgcGACUUGCCGCa -3'
miRNA:   3'- -GUUGCaGUGGAa--CUGG--CUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 50409 0.7 0.71481
Target:  5'- gAGCGcgccggUGCCUUGACCGGCUCggGCaGCg -3'
miRNA:   3'- gUUGCa-----GUGGAACUGGCUGAG--UGgCG- -5'
23209 3' -52.7 NC_005259.1 + 52568 0.67 0.841285
Target:  5'- aCAugGUCgACCg-GACCGGCcugagcgUCGCCGa -3'
miRNA:   3'- -GUugCAG-UGGaaCUGGCUG-------AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 53218 0.67 0.859022
Target:  5'- -cGCGUCGCCcgcgcccugcUUGagguucgcgccGCCGACaccgUCGCCGCc -3'
miRNA:   3'- guUGCAGUGG----------AAC-----------UGGCUG----AGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 53737 0.68 0.833386
Target:  5'- uGAUGUCGCCgggUGuCC-ACUCgguGCCGCc -3'
miRNA:   3'- gUUGCAGUGGa--ACuGGcUGAG---UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 56230 0.66 0.911015
Target:  5'- cCAGuCGUCGCCgccgaccacguuggGAUCGGCggccuugagCGCCGCc -3'
miRNA:   3'- -GUU-GCAGUGGaa------------CUGGCUGa--------GUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.