miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 44405 0.67 0.874185
Target:  5'- -cACGUCggugcccGCC-UGACCGGCagCGCCGa -3'
miRNA:   3'- guUGCAG-------UGGaACUGGCUGa-GUGGCg -5'
23209 3' -52.7 NC_005259.1 + 43882 0.66 0.889904
Target:  5'- gCAGCGUUGCC---GCCGACaUUGcCCGCg -3'
miRNA:   3'- -GUUGCAGUGGaacUGGCUG-AGU-GGCG- -5'
23209 3' -52.7 NC_005259.1 + 40671 0.66 0.916663
Target:  5'- gCAGCGcgagCGCCUUGGu--GCUCACCGg -3'
miRNA:   3'- -GUUGCa---GUGGAACUggcUGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 40247 0.71 0.643417
Target:  5'- uCGAUGUCGuCCUccacagugcccauagUGACaCGAacaCUCACCGCg -3'
miRNA:   3'- -GUUGCAGU-GGA---------------ACUG-GCU---GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 37032 0.66 0.882558
Target:  5'- aCAAUGUCgAUCUUGguGCCcGC-CACCGCc -3'
miRNA:   3'- -GUUGCAG-UGGAAC--UGGcUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 36437 0.71 0.640139
Target:  5'- gCAGCGUCGCCgaGGUCGACcgcgucgagggugagCACCGCc -3'
miRNA:   3'- -GUUGCAGUGGaaCUGGCUGa--------------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 36216 0.66 0.889904
Target:  5'- aCAGCGcgaugccgagCACCUUGGCCaGCgcgagCGCCuGCg -3'
miRNA:   3'- -GUUGCa---------GUGGAACUGGcUGa----GUGG-CG- -5'
23209 3' -52.7 NC_005259.1 + 35542 0.66 0.910374
Target:  5'- --cCGUCGCCgauccGCCcgauGACUUGCCGCc -3'
miRNA:   3'- guuGCAGUGGaac--UGG----CUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 34509 0.69 0.772756
Target:  5'- aCGAUGUCGCCgacauugcgcacGACUGAC-CACCGa -3'
miRNA:   3'- -GUUGCAGUGGaa----------CUGGCUGaGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 33906 0.66 0.910374
Target:  5'- gCGACGg-GCCgaGACCGGC-CACgGUg -3'
miRNA:   3'- -GUUGCagUGGaaCUGGCUGaGUGgCG- -5'
23209 3' -52.7 NC_005259.1 + 33698 0.69 0.776746
Target:  5'- uCAugGaUCACCacggugGACgGAUUCugCGCg -3'
miRNA:   3'- -GUugC-AGUGGaa----CUGgCUGAGugGCG- -5'
23209 3' -52.7 NC_005259.1 + 32872 0.72 0.5737
Target:  5'- uCGACGcgCGCggUGAUCGAUUCACCGg -3'
miRNA:   3'- -GUUGCa-GUGgaACUGGCUGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 31803 0.73 0.552205
Target:  5'- --uCGUCAUCgagcucGACCGACccCACCGCg -3'
miRNA:   3'- guuGCAGUGGaa----CUGGCUGa-GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 31123 0.68 0.833386
Target:  5'- cCGAUGUCGCCgaUGAUCGGgaUGCUGCc -3'
miRNA:   3'- -GUUGCAGUGGa-ACUGGCUgaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 30706 0.69 0.746292
Target:  5'- gAGCGUguUgUUGccGCCGACgCGCCGCa -3'
miRNA:   3'- gUUGCAguGgAAC--UGGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 30326 0.66 0.903817
Target:  5'- -cGCGUCguACC-UGACaCGcagcacgaGCUCACCGUg -3'
miRNA:   3'- guUGCAG--UGGaACUG-GC--------UGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 30001 0.69 0.776746
Target:  5'- gGugGUCACCacGACaagguGAC-CACCGCc -3'
miRNA:   3'- gUugCAGUGGaaCUGg----CUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 29454 0.76 0.401283
Target:  5'- cCAGCGUgACCUUGccgcCCGGCUCggcauggACCGCc -3'
miRNA:   3'- -GUUGCAgUGGAACu---GGCUGAG-------UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 27251 0.68 0.833386
Target:  5'- uCGAgGUgACCcgcguagGACCGAUaCGCCGCc -3'
miRNA:   3'- -GUUgCAgUGGaa-----CUGGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 26044 0.66 0.903817
Target:  5'- gCAGCGcCGCCggguUGGCCauGC-CGCCGCc -3'
miRNA:   3'- -GUUGCaGUGGa---ACUGGc-UGaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.